Gene detail information of Glyur000017s00002456 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38840.1 | 1.00E-16 | SAUR-like auxin-responsive protein family |
| NR | XP_003540902.1 | 3.49E-49 | PREDICTED: auxin-induced protein X10A-like [Glycine max] |
| Swissprot | tr|P33080|AX10A_SOYBN | 1.00E-43 | Auxin-induced protein X10A |
| trEMBL | tr|I1LPV6|I1LPV6_SOYBN | 4.00E-44 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G03950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 512520 | 512798 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002456.1 | PF02519.9 | Auxin_inducible | 19 | 89 | 1.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.729 |
| SRR1783600 | control | 1.886 |
| SRR1783602 | moderate drought stress | 5.553 |
| SRR1811619 | moderate drought stress | 5.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.519 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.030 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.564 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.227 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.396 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.194 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.625 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.688 |
| SRR2868004 | Drought Stress (root) | 1.234 |
| SRR2967015 | Control (root) | 0.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.974 |
| SRR9715740 | Leaf | 1.104 |
| SRR9715741 | Leaf | 6.763 |
| SRR9715739 | Root | 0.703 |
| SRR9715742 | Root | 0.855 |
| SRR9715743 | Root | 1.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.144 |
| SRR8749028 | MeJA induced 9h | 0.587 |
| SRR8749029 | MeJA induced 9h | 1.446 |
| SRR8749030 | Uninduced | 0.841 |
| SRR8749031 | Uninduced | 1.762 |
| SRR8749032 | Uninduced | 1.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.584 |
| SRR8400027 | Control - Root | 4.272 |