Gene detail information of Glyur000017s00002455 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38840.1 | 2.00E-25 | SAUR-like auxin-responsive protein family |
| NR | XP_004506990.1 | 1.17E-45 | PREDICTED: auxin-induced protein X10A-like [Cicer arietinum] |
| Swissprot | tr|P33081|AX15A_SOYBN | 1.00E-43 | Auxin-induced protein 15A |
| trEMBL | tr|V7AI18|V7AI18_PHAVU | 3.00E-45 | Uncharacterized protein {ECO:0000313|EMBL:ESW03726.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 511003 | 511260 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002455.1 | PF02519.9 | Auxin_inducible | 10 | 82 | 5.40E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.103 |
| SRR1783600 | control | 1.985 |
| SRR1783602 | moderate drought stress | 6.718 |
| SRR1811619 | moderate drought stress | 5.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.504 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.700 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.782 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.265 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.428 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.658 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.204 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.196 |
| SRR2868004 | Drought Stress (root) | 1.728 |
| SRR2967015 | Control (root) | 0.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.725 |
| SRR9715740 | Leaf | 3.375 |
| SRR9715741 | Leaf | 4.897 |
| SRR9715739 | Root | 0.388 |
| SRR9715742 | Root | 0.857 |
| SRR9715743 | Root | 0.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.733 |
| SRR8749028 | MeJA induced 9h | 0.270 |
| SRR8749029 | MeJA induced 9h | 0.443 |
| SRR8749030 | Uninduced | 1.194 |
| SRR8749031 | Uninduced | 0.675 |
| SRR8749032 | Uninduced | 0.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.011 |
| SRR8400027 | Control - Root | 1.697 |