Gene detail information of Glyur000017s00002454 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38840.1 | 6.00E-27 | SAUR-like auxin-responsive protein family |
| NR | XP_004500757.1 | 2.59E-48 | PREDICTED: auxin-induced protein 6B-like [Cicer arietinum] |
| Swissprot | tr|P33081|AX15A_SOYBN | 2.00E-46 | Auxin-induced protein 15A |
| trEMBL | tr|I1LPU9|I1LPU9_SOYBN | 6.00E-48 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G03870.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 508986 | 509243 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002454.1 | PF02519.9 | Auxin_inducible | 11 | 81 | 2.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.068 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 3.329 |
| SRR1811619 | moderate drought stress | 3.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.252 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.417 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.831 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.610 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.106 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.324 |
| SRR2967015 | Control (root) | 0.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.740 |
| SRR9715740 | Leaf | 7.356 |
| SRR9715741 | Leaf | 23.939 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.744 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.069 |
| SRR8749030 | Uninduced | 0.074 |
| SRR8749031 | Uninduced | 0.149 |
| SRR8749032 | Uninduced | 0.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.102 |
| SRR8400027 | Control - Root | 0.149 |