Gene detail information of Glyur000017s00002449 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34760.1 | 1.00E-46 | SAUR-like auxin-responsive protein family |
| NR | CDO96975.1 | 1.04E-64 | unnamed protein product [Coffea canephora] |
| Swissprot | tr|P33081|AX15A_SOYBN | 3.00E-24 | Auxin-induced protein 15A |
| trEMBL | tr|A0A068TKX6|A0A068TKX6_COFCA | 4.00E-65 | Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO96975.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 494285 | 494605 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002449.1 | PF02519.9 | Auxin_inducible | 17 | 106 | 7.70E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 71.062 |
| SRR1783600 | control | 71.887 |
| SRR1783602 | moderate drought stress | 23.036 |
| SRR1811619 | moderate drought stress | 22.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.203 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.252 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.806 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.414 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.151 |
| SRR2868004 | Drought Stress (root) | 11.607 |
| SRR2967015 | Control (root) | 8.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.935 |
| SRR9715740 | Leaf | 1.014 |
| SRR9715741 | Leaf | 3.644 |
| SRR9715739 | Root | 1.486 |
| SRR9715742 | Root | 1.541 |
| SRR9715743 | Root | 2.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.199 |
| SRR8749028 | MeJA induced 9h | 0.566 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 166.029 |
| SRR8400027 | Control - Root | 134.755 |