Gene detail information of Glyur000017s00002448 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75590.1 | 3.00E-34 | SAUR-like auxin-responsive protein family |
| NR | XP_003607090.1 | 1.23E-72 | Auxin-induced protein 6B [Medicago truncatula] |
| Swissprot | tr|P32295|ARG7_VIGRR | 1.00E-16 | Indole-3-acetic acid-induced protein ARG7 |
| trEMBL | tr|G7JL12|G7JL12_MEDTR | 5.00E-73 | SAUR-like auxin-responsive family protein {ECO:0000313|EMBL:AES89287.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 471930 | 472385 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002448.1 | PF02519.9 | Auxin_inducible | 13 | 100 | 4.40E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 357.517 |
| SRR1783600 | control | 362.880 |
| SRR1783602 | moderate drought stress | 237.779 |
| SRR1811619 | moderate drought stress | 236.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 247.814 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 255.652 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.348 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.714 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.983 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.694 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.213 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 132.229 |
| SRR2868004 | Drought Stress (root) | 88.311 |
| SRR2967015 | Control (root) | 120.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.329 |
| SRR9715740 | Leaf | 5.985 |
| SRR9715741 | Leaf | 7.100 |
| SRR9715739 | Root | 96.319 |
| SRR9715742 | Root | 79.646 |
| SRR9715743 | Root | 87.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.006 |
| SRR8749028 | MeJA induced 9h | 9.941 |
| SRR8749029 | MeJA induced 9h | 17.921 |
| SRR8749030 | Uninduced | 1.008 |
| SRR8749031 | Uninduced | 1.624 |
| SRR8749032 | Uninduced | 1.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 228.884 |
| SRR8400027 | Control - Root | 225.991 |