Gene detail

Gene detail information of Glyur000017s00002443.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38900.3	5.00E-98	Basic-leucine zipper (bZIP) transcription factor family protein
NR	XP_004494977.1	0	PREDICTED: probable transcription factor PosF21-like [Cicer arietinum]
Swissprot	tr\|Q6S4P4\|RF2B_ORYSJ	1.00E-48	Transcription factor RF2b
trEMBL	tr\|V7AI26\|V7AI26_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW03736.1}

Sequence

Transcript Sequence

>Glyur000017s00002443.1
CACAGGGAAGAAAATTAGAAAAAAGAAAAAAAAAAACCTGCCGTATCCACAAAAACAAAATGAGGTCGGAATGAAATTGAAATGCGAGCGAAATGCAAATTGCGCTCAAATGAAATTCTTATTAAATTCACGCGTAGTAGTCATGAAATCCGTGTAGTAGTAGTAGTCATCGTCGCGGATGTAGAGAGAGAAAGAAAGGGAAAGCAGAGAGAGAGAGAGAGAGATACTGTGTTTGTGTGTGTGTCTGAGAAACCTTTTTTTTTTTCTCCTTTTCTTCTTGGCCATTGTTGTTGTTCTTCTTCTTCTAGAGAGAGAGAGAGAGAGTGAATATTGGAGAGATAAGCGCCTGCTCCTCCTTCGGCATTTCCGCCAGAGACAAAGCTAAGACCGGCGCTACTATTAATGAATTGGTTCATTCGTGTTTTCACCATTTCTGATTCGCTTCAGATGAACACTTCCGAGGTAGCTTTCCATTGTAGCTGAGAGAGAGAGAGAGAGAGAGAAAAGCGTAAATCTCATTCATTCAGCTTATTCTGATCATGGTTTGGTTGAATCGGAATTCTGAGTTCCCAACTTAAAGCTAAGTACTGTTTGTTTTGGATTGTCTGTGTTTGTGTTAGTGGTGGTGGTAGTGAGGGATTGCGTGTTGGTGAAGCAGAATGGGTGATGGTGAGGACGCAAATAATAATGACATGATGATGCAGAGGTTTATGAAACAGGCTATGAACAATCAGATGGAACAGCTAAGCATACCTCAATTCAATATNCGTGGTAGTACTGGGAGGCACCATTTTTTTGGTGGAGTTGAAGGTAACATTAACAAAAGACCAGGTATACCACCTTCACACCCACACCAGATCCCACCCATTTCACCATATTCTCAGATCCCGGTTTCACGGCCCCAAATGGCTGCTGCTTCCCCTACACCTACCCACACCCGATCACTCTCTCAGCCTTCATTCTTCTCGCTTGATTCTCTACCACCACTTAGCCCCTGCACGTTCCGTGACACCACCTCCACGTCACCCTCCGACACTGCTGACGTGTCAATGGAAGATCGTGACTCCGTGTTACCTCCGTCGCCATTCACCGCCAACAGAAACAACCCTTTGCCCCCTCGGAAATCTCACAGGCGTTCTAACAGTGATATTCCGTTTGGTTTCTCCACCGTGTTGCAGTCTTCGCCACCTCTCATTCCTCTTCGGGGAAGGGAAGTTGCGAAACCCGCTGCTATTGCTACTGCCAGGTTGGTGAAGAAGGAAACAACTCAAACCAGTGTTGATCATAATGTGGAGGGTTCCGGCGAGAAGAAGTCGCCGGAAGGGGAAGTTGTCGATGACCTTTTCTCTGCTTACATGAATTTGGACAGCATTGATGCCCTCAACTCTTCCGGGACCGATGACAAGAACGGTGGTGCCGAGAATCGTGACGATTTGGATAGTAGTAGAGCTAGCGGGACGAAGACTAATGGAGGTGATAGCAGTGATAATGAAGCTGAAAGCAGTGTTAATGAGAGTGGGGATAGTATGCAAAGACAACAAGGGATGGTGAANAATAGTAATATTTTTGGTGAGAGGAGGGAAGGGATGAAGAGGAGTGCTGGGGGTGATATTGCACCAACAACCAGGCACTATAGGAGTGTTTCCATGGATAGTTGTTTCATGGGGAAGTTGAATTTCAATGATGAGTCCTCTAAGCTCCCACCTTCTTCACCTGGGTTGCTTTCGCCNGGTGGCGGCAATGTCATCGATGGGAATTCGGCGGCTTTCAGCTTGGAGTTTGGGAATGGCGAATTCAGTGGGCCTGAGTTGAAGAAAATCATGGCCAATGAGAAACTTGCTGAGATTGCCATGGCAGATCCAAAACGTGCTAAGAGGATTTTGGCTAATCGGCAATCGGCTGCGCGTTCCAAAGAACGGAAGATGCGTTACATTTCAGAACTAGAACACAAGGTTCAGACTCTACAGACTGAAGCCACCACACTGTCTGCACAGCTTACTCTGTTACAGAGAGACTCTGTTGGTCTCACTAACCANAATAGTGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAGGCAAAACTCCGAGATGCTCTGAATGAGGCACTTACTGCTGAGGTCCAAAGACTGAAGCTTGCTACAGCTGAGCTGAATGGGGAGTCACATCCTTCTAGCTGCTTGATTCAGCAACATTCTGTCAACCCTCTGATGTTCCAGCAGCACCAGCACCAGCCTCGTCCGACATCCCAACAAAACATTCATCTTCAACAGCATCAGCAACAACATCAACAGCAGCAGAATGGTAATGCCAACTCAAAGACCGACTGAAAGCAATAGGTTGGTTTGGAGGTCCTGCAGCTGGATGGTTCTTTATATATTCGTTTCTGTTTCATTGCACTCAGTTTCACATTTACAGAAGTTTTCCTTTATTTGCCATGGTCGTAAGTTTAATTCACAATCACATTGCCTATCCAGCTCGGATAGAAAGTCCACATACAAGTCCTAATTCCTGTCTTATATTTAAATTATACATCATATTTAATTTCAGTAAATATCTAAAATTGTAAGCATTATTTGGACATGATTTTTTATGATAACATTTAGATAAAGTGTTACAAACTCTTTATTTTTTTGGGGTAATGAATGACCAATTTATTTTGGTTCTATCCAGAGCCGTTTGGTCTAATTGAAGCTAAGGTTCTATGCATTAATTTAAAGGCAGACTCAATAATTCAAGGATAAGGATTGATTTCTGACCCGACATATTCGCATGAATTCTATACTATATCCTGAACACATTTTCTTCTATCGATTTCTAGCCTACCTTGACTAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	453915	458462	+

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002443.1	PF00170.16	bZIP_1	402	453	7.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.966
SRR1783600	control	49.151
SRR1783602	moderate drought stress	25.059
SRR1811619	moderate drought stress	24.773

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.419
DRR006520	Root Summer glycyrrhizin high producing strain	27.411
DRR006521	Root Winter glycyrrhizin high producing strain	16.305
DRR006522	Root Winter glycyrrhizin high producing strain	16.492
DRR006523	Root Summer glycyrrhizin low producing strain	41.872
DRR006524	Root Summer glycyrrhizin low producing strain	41.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.953
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.809

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.999
SRR2868004	Drought Stress (root)	26.097
SRR2967015	Control (root)	27.657

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.757
SRR9715740	Leaf	33.859
SRR9715741	Leaf	53.193
SRR9715739	Root	15.868
SRR9715742	Root	37.925
SRR9715743	Root	35.141

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.923
SRR8749028	MeJA induced 9h	84.133
SRR8749029	MeJA induced 9h	78.196
SRR8749030	Uninduced	20.490
SRR8749031	Uninduced	39.058
SRR8749032	Uninduced	26.070

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.397
SRR8400027	Control - Root	37.929