Gene detail

Gene detail information of Glyur000017s00002441.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16530.1	1.00E-97	3-oxo-5-alpha-steroid 4-dehydrogenase family protein
NR	XP_003537828.2	0	PREDICTED: polyprenol reductase 2-like [Glycine max]
Swissprot	tr\|Q9SI62\|POED2_ARATH	3.00E-128	Polyprenol reductase 2
trEMBL	tr\|I1LJ54\|I1LJ54_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G11780.1}

Sequence

Transcript Sequence

>Glyur000017s00002441.1
AACCGGATCCCTAACCTCTCCCTTCACGCACCCAAGTTCTTATTAATTCCCCGCGCTTCACTCCTGGTATCTCTCTCTCCATACTTTAAAAATTCACACAGAAAACGATGGTGTTGTCATGGTTCATGTTGAAGGATAAACTGATGGATGTGCCTNTTGTTCAATTGCTGAGGGTGGCTTGGATCGCTGGCACATTGCCTATCATCATCGCTTCCATTCCCATTCCCATGCTGAGCTGGCTCCGTGGAACCTTGTTAGGGTTTGCAAGGAGAGGAAAAATCANGCACTCCTCCTCCAAAAGATTCACCGTTCCTCAAAGATTTTTCTTGCACTTCTATGCCGTGGCTTCTATATGGACAACGTTCCTGCTTGTTACAACTTGGGTATATGCGTACGGAATGGTTCCACTGGTTTCAGAGCCGTTTTCTTATTCTACTATCACAAGCTACTTGACTGGAGGTTCACCTATTAGAACTGGTTCTGCTACATTACTGCAGAGATATGTTGCATGGCAAGCTGTTTTTCTGCTTTTGATGATGGAAGCTCAAGTTCTCAGACGCCTTTATGAAACCATATATGTCTTCAACTATAGCCCTCTTGCTCGCATGCATATCTTTGGTTATCTGGCTGGATTGTTTTTCTACGTAGCAGCACCATTATCGCTGTGTGGTGATTGTGCTTTAGAGGTGTTTGACTTCCTAGCAAATCTAGCGACTGAGTTCATTGTCAAAGGAAAGAATCAGATGCCCGCAATAGAGTTGGAAATCTGGCAAGCTTTACATCCTCTCATCAAGCTCGGGTGGAAGCATTGGATTGGTGTGGCTGTTTTTTTGTGGGGATGGATCCATCAATACCGATGCCATCAGATTCTTGGTTCTCTACGAGATTCAAGACAAGCGGATGAATATGTAATTCCTCGTGGCAATTGGTTCGAAATCGTTTCCTCTCCACATTATCTCTCTGAAATTGTTATATATGCTAGTTTTGTGGTCGCTACTGGAGGATCCAATCTAACAATCTGGCTTCTTTTTGTCTTTGTGGTGGCAAATCTGGCATTTGCAGCCGTGGAAACACATAGCTGGTATCGTCATAAGTTTGAAGACTATCCAAGTAACCGGTTTGCTATAATTCCATTTGTTCTCTGAGGTTGTGAANCAACTTGTAATCACTAATGATCACAAAATATTGCAGTAAAGAACTTCATTGTTTCTCTAGATGTACATATTTAGGTTGAGCTGTTTTGTTTATAGAAAAGCTTAATTAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	441496	444583	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12345	SRD5A3	EC:1.3.1.22 1.3.1.94	Steroid hormone biosynthesis	map00140

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component

GO:0005737 cytoplasm

GO:0016021 integral component of membrane

molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002441.1	PF02544.11	Steroid_dh	232	345	5.40E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.257
SRR1783600	control	8.321
SRR1783602	moderate drought stress	8.154
SRR1811619	moderate drought stress	8.566

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.310
DRR006520	Root Summer glycyrrhizin high producing strain	7.559
DRR006521	Root Winter glycyrrhizin high producing strain	7.388
DRR006522	Root Winter glycyrrhizin high producing strain	6.763
DRR006523	Root Summer glycyrrhizin low producing strain	8.340
DRR006524	Root Summer glycyrrhizin low producing strain	8.318
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.433
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.520

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.412
SRR2868004	Drought Stress (root)	18.066
SRR2967015	Control (root)	17.726

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.681
SRR9715740	Leaf	11.780
SRR9715741	Leaf	13.280
SRR9715739	Root	6.476
SRR9715742	Root	8.019
SRR9715743	Root	8.032

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.500
SRR8749028	MeJA induced 9h	11.496
SRR8749029	MeJA induced 9h	8.223
SRR8749030	Uninduced	6.640
SRR8749031	Uninduced	7.336
SRR8749032	Uninduced	6.162

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.781
SRR8400027	Control - Root	18.555