Gene detail

Gene detail information of Glyur000017s00002439

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38920.1	4.00E-58	vacuolar-type H(+)-ATPase C3
NR	XP_003607079.1	2.76E-108	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 [Medicago truncatula]
COG	NP_345779.1	9.00E-09	V-type ATP synthase subunit K [Streptococcus pneumoniae TIGR4]
Swissprot	tr\|P0DH94\|VATL5_ARATH	4.00E-109	V-type proton ATPase subunit c5
trEMBL	tr\|G7JJX3\|G7JJX3_MEDTR	1.00E-108	Vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 {ECO:0000313\|EMBL:AES89276.1}

Sequence

Transcript Sequence

>Glyur000017s00002439.1
GCACCCACGTTCATCACAAACCTCCCCGTACACCAACAGAGATCGGAACTTGAAAGGAACTTCTCTCTCTCCGTGTGAGGAAAATCGGAATACCGTAATTCTCAGGTCAGATCTATTCGACGTCGTTTTAGTACAGATGGCTCCNTTCAGCGGCGATGAGACGGCACCGTTTTTTGGCTTCCTTGGAGCAGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACGGCAAAGAGTGGTGTCGGTGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACCGGCATTAACCCCAAGGCCAAATCTTATTACCTTTTCGACGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGTCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTCATTGTTGGTATTATCTTGTCTTCTCGTGCTGGCCAGTCTAGAGCCGAGTAGGAGAGGAGCTGTGCTGCTGCAAAATATTCTTTGACCACCAACCTTCTTATTAAGAGGGCGAGGGGGTGAATTTTTAGTTGTTGGGTTAGTGATGTTTGGACACCGCCTGCAGGGTTTGACAAACACCATTTGGTGGTGTTTGTATAAGTAGTATTTCTTTGCTTAATAAAGCTTTTTAAGCTGCATCCTTTTCTCCTTGTGAAATGTATTATGCCATATGATCTGAGACTACAATTTTTTTCTTCTTGCTGCTGCTGCTGAAACTGGTGCATCATGCATGTAATGATGTGTTGCCGATGTAACTTAATATGCATTAGTATTTAGTGGGTCTTTTCATATTGGATGCTGGCTTGCTGGTAAACACTGCTGTGATTTTGGATTTGGACAGTGGTATAATGACATTTTGACAAAGTGAAGAGCATTTCTGAGTCGTGGCCATATTCTAAAATCATATATGATTTTGAATCATTTGACTGTTGAAGTAAAGCTGGGAATATGAAATGAACTTAAGAGAAATTTAAATCGACAAGGAACTTTTGTACTAAGCTATTAGTATAGTATTTCTTGAACATTTTTCCTGAAAGAAATAGAATGACATTACTCAGCGCGCTATATTATAAAGATACCCAGAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	428532	430669	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015991 ATP hydrolysis coupled proton transport

cellular_component

GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain

GO:0033179 proton-transporting V-type ATPase, V0 domain

molecular_function
GO:0015078 hydrogen ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002439.1	PF00137.16	ATP-synt_C	13	77	5.70E-13
Glyur000017s00002439.1	PF00137.16	ATP-synt_C	92	156	1.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	77.987
SRR1783600	control	78.384
SRR1783602	moderate drought stress	51.670
SRR1811619	moderate drought stress	50.214

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	107.266
DRR006520	Root Summer glycyrrhizin high producing strain	105.683
DRR006521	Root Winter glycyrrhizin high producing strain	47.394
DRR006522	Root Winter glycyrrhizin high producing strain	46.202
DRR006523	Root Summer glycyrrhizin low producing strain	90.624
DRR006524	Root Summer glycyrrhizin low producing strain	90.281
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.199
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.134

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	338.703
SRR2868004	Drought Stress (root)	224.924
SRR2967015	Control (root)	186.961

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	230.904
SRR9715740	Leaf	229.703
SRR9715741	Leaf	229.040
SRR9715739	Root	265.985
SRR9715742	Root	193.221
SRR9715743	Root	208.134

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	115.683
SRR8749028	MeJA induced 9h	83.795
SRR8749029	MeJA induced 9h	90.684
SRR8749030	Uninduced	58.215
SRR8749031	Uninduced	65.201
SRR8749032	Uninduced	66.309

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	223.563
SRR8400027	Control - Root	219.730