Gene detail

Gene detail information of Glyur000017s00002438

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21280.1	2.00E-129	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003607078.1	0	hypothetical protein MTR_4g072040 [Medicago truncatula]
COG	YP_007081637.1	3.00E-98	hypothetical protein Ple7327_2817 [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9SJU9\|GC1_ARATH	3.00E-164	Epimerase family protein SDR39U1 homolog, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|G7JJX2\|G7JJX2_MEDTR	0	NAD(P)-binding rossmann-fold protein {ECO:0000313\|EMBL:AES89275.1}

Sequence

Transcript Sequence

>Glyur000017s00002438.1
AATCTCAATGGAGACGTGGTCTCACACCGTTTGTCCTTCTCTTCACCTTCCTCGACCCCTCTTGACCCGGGAAACTAGGAGGTTCAGGGTTTGGTGTGGCTCTGATCAAAGCTCCAAGGGAAGTCAAATGATCATATCTGTAACTGGAGCAACAGGTTTTATAGGTAGAAGATTGGTGCAAAAGCTGCACGCAGAAAATCATAGCGTTCATGTCCTGACACGCTCTAAATCCAAAGCAGAACTAATTTTTCCGGTGAAAGACTTTCCAGGAATCAAGATTGCAGAGGAGCCAGAATGGAAAGATAGCATNCAGGGTTCAACAGGGGTTGTGAATTTGGCAGGAATGCCCATAAGTACCAGATGGTCTTCTGAGGTTATTGCCATGATTAAACTCATTTTAATGCTGCAGATAAAGAAAGAAATCAAGCAGAGCAGGATTAGNGTGACCTCAAAAGTTGTAGAATTGATAAACAGTGCACCAGGTGATATTCGACCTAAAGTTTTGGTTAGTGCAACAGCTGTTGGTTATTATGGCACCAGTGAGACACAAGTCTTCGATGAACAAAGTCCATCAGGAAAGGATTACTTGGCTGAGGTTTGTANAGAATGGGAATCAACNGCCGTAAGGGTAAATGGAGATGTTAGAGTGGCTCTTGTTCGCATTGGTGTTGTTCTTGGTAAAGATGGTGGAGCACTAGCTAAAATGATACCTATGTTCATGATGTTCGCTGGTGGACCTCTAGGTTCCGGAAAACAATGGTTCTCCTGGATTCATCTAGATGACATTGTCAATTTAATTTATGAAGCACTATCAAATCCATCTTACAAAGGAGTTATCAATGGAACTGCACCAAATCCTGTGCGATTGTCAGAATTGTGTGAGCAGCTGGGACATGTCTTGGGTCGACCCTCGTGGCTGCCGGTGCCCAACTTTGCACTCAAGGCTGTTCTTGGAGAAGGTGCTACTGTGGCAAAATCTGAAAATCCACAAATGATAATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	421226	426503	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002438.1	PF13460.1	NAD_binding_10	43	269	1.00E-13
Glyur000017s00002438.2	PF01370.16	Epimerase	43	265	6.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.290
SRR1783600	control	3.312
SRR1783602	moderate drought stress	2.029
SRR1811619	moderate drought stress	1.397

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.835
DRR006520	Root Summer glycyrrhizin high producing strain	1.740
DRR006521	Root Winter glycyrrhizin high producing strain	0.712
DRR006522	Root Winter glycyrrhizin high producing strain	0.957
DRR006523	Root Summer glycyrrhizin low producing strain	3.740
DRR006524	Root Summer glycyrrhizin low producing strain	3.177
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.886
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.911

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.711
SRR2868004	Drought Stress (root)	5.282
SRR2967015	Control (root)	6.045

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.783
SRR9715740	Leaf	68.633
SRR9715741	Leaf	29.998
SRR9715739	Root	0.315
SRR9715742	Root	0.495
SRR9715743	Root	0.449

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.946
SRR8749028	MeJA induced 9h	2.786
SRR8749029	MeJA induced 9h	3.219
SRR8749030	Uninduced	1.383
SRR8749031	Uninduced	1.032
SRR8749032	Uninduced	1.751

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.842
SRR8400027	Control - Root	5.825