Gene detail

Gene detail information of Glyur000017s00002436

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18830.1	0	polyol/monosaccharide transporter 5
NR	XP_003607077.1	0	Sorbitol-like transporter [Medicago truncatula]
COG	YP_004290515.1	3.00E-88	sugar transporter [Methanobacterium sp. AL-21]
Swissprot	tr\|Q8VZ80\|PLT5_ARATH	0	Polyol transporter 5
trEMBL	tr\|G7JJX1\|G7JJX1_MEDTR	0	Polyol/monosaccharide transporter 1 {ECO:0000313\|EMBL:AES89274.1}

Sequence

Transcript Sequence

>Glyur000017s00002436.1
ATGGCTGAGGGCGAAGCANCAGCTCCGAAATTATCTCTTCAGGAGGATTTTGATCCCCAAAACAAGAAGCCCAAACGGAACAAGTTCGCTTGTGCNTGTGCTGTCTTGGCTTCCATGACTTCTGTCCTACTTGGTTACGATATTGGTGTGATGAGTGGAGCAGCCATCTATATAAAAAGAGACCTCAAAATCACCGACGTGCAAATCGAAATCCTAGCCGGCATCATAAACATTTACTCTCTCTTGGGTTCTTTCATTGCGGGAAGAACCTCCGACTGGATTGGCCGGCGTTACACGATCGTCCTCGCCGGTGTCATCTTCTTCGCCGGAGCCATCCTCATGGGATTTTCTCCCAACTATGCCTTCCTCATGTTCGGCCGCTTCGTCGCCGGCATTGGCATTGGCTTCGCCTTTCTGATTGCCCCTGTCTACACTTCTGAAATCTCCCCAACTTCCTCTCGTGGCTTCCTCACTTCCTTGCCTGAGTTTTTCCTGAATGGAGGGATTTTAATTGGATACATTTCAAACTACGCATTCTCCAAGCTACCACTGCGCTTGGGTTGGCGACTCATGCTTGGAATCGGAGCCATTCCATCCATATTCCTAGCGGTGGCAGTGTTAGTGATGCCCGAGTCACCTCGGTGGCTCGTTGCCAAGGGCCGTTTAGGCGAAGCCCGAAAAGTCCTAAACAAAATCTCCGATTCCAAGGAAGAGGCTCAGCTAAGGCTAGCCGATATTAAACAGACAGTTGGAATCCCCGCGGACTGCAACGACGACGTCGTTTCGGTAACCGAGCAAGTCCAACATGGCAAAGGCGTATGGAAAGAACTTCTCCTTTATCCTACACCCGCGGTTCGTCACATATTCATTGCCTCACTTGGGATTCACTTCTTCGCACAGGCGACGGGCATAGACGCCGTCGTTTTGTACAGCCCCAGAATCTTCGAGTACGCAGGGATCAAGTCCGACACGNATAAGCTCCTCGCAACCGTAGCCGTTGGATTCGTGAAGACCGTATCCATCTTGGTGGCCACGTTTTTATTGGACCGCGTGGGGCGACGCGCGTTGTTGCTGAGCAGTGTTGGCGGGTTGATAGTTTCGCTTCTTACCCTTGCGGTGAGTCTCACAGTTATTGATCGTTCACGCGCCACGCTGACGTGGGCCATTGGGCTCAGTTTAGTGGCGGTGTTGTCCTACGTGGGCACGTTCTCGATCGGGTCGGGTCCCATCACGTGGGTTTATAGCTCCGAGATATTTCCGCTGAGGCTACGCGCCCAGGGGGTGGCGATTGGGGCGGGGGTGAATAGGGTCACGAGTGGGGTCATCTCGATGACTTTTCTGTCCCTCTCTCGTGCCATCACCATTGGGGGTGCTTTCTTTCTCTTNGCCGGAATCGCGGTTGCCGCGTGGGTCTTTCACTATACCATGCTCCCTGAAACACGAGGCAAAACTCTGGAGGAAATTGAAGGGTCTTTTGGTAATTTCTGGAGGAAACCAAATGCCAGTGGTGCCACCGATGCCGAAGGTGAAAACAACTGTAACGGCCAAATTCAATTAAGTACCAATGGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	406422	409076	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002436.1	PF00083.19	Sugar_tr	33	490	1.70E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.765
SRR1783600	control	2.878
SRR1783602	moderate drought stress	0.603
SRR1811619	moderate drought stress	0.595

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.494
DRR006522	Root Winter glycyrrhizin high producing strain	0.553
DRR006523	Root Summer glycyrrhizin low producing strain	0.141
DRR006524	Root Summer glycyrrhizin low producing strain	0.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.495
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.658

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.538
SRR2868004	Drought Stress (root)	3.506
SRR2967015	Control (root)	2.105

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.027
SRR9715740	Leaf	16.647
SRR9715741	Leaf	36.108
SRR9715739	Root	2.871
SRR9715742	Root	2.184
SRR9715743	Root	2.146

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.337
SRR8749028	MeJA induced 9h	3.070
SRR8749029	MeJA induced 9h	1.875
SRR8749030	Uninduced	3.373
SRR8749031	Uninduced	1.144
SRR8749032	Uninduced	1.082

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.087
SRR8400027	Control - Root	1.309