Gene detail

Gene detail information of Glyur000017s00002435.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16500.1	0	arginine decarboxylase 1
NR	BAE71251.1	0	putative arginine decarboxylase [Trifolium pratense]
COG	YP_007054049.1	2.00E-171	arginine decarboxylase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q43075\|SPE1_PEA	0	Arginine decarboxylase
trEMBL	tr\|Q2PEV1\|Q2PEV1_TRIPR	0	Arginine decarboxylase {ECO:0000256\|RuleBase:RU003740}

Sequence

Transcript Sequence

>Glyur000017s00002435.1
ATGCCGGCGTTGGCTGCACTTGCTCCTCCTCCTCCTCCTCCCGGCTATGCTNTCGCCGGAGACCCCACTCTTCTGCCGCCGGTGACATTTTCCGGCGAGACAACCGACGACGATTCCCGTTGGTCTCCCGCTTTATCCTCCAAGCTCTACCGGATCGACGCCTGGGGTGGGGCTTACTTCGGCGNGAACACCGCCGGCAGCGTCACCGTCCGTCCCCACGGCACCGCCACGCTGGCACACCAAGAGATCGATCTTCTCAAGGTGGTTAAGAAAGCCTCCGAAGGACTCGGGCTTCGTCTTCCCCTCATTGTTCGGTTTCCCGATGTACTTAAGAACCGGGTCGAGTCCCTTNACAACGCTTTCGAGTGTGCAATCCAATCTCAGGGTTATGAGTCTCGTTACCAAGGCGTTTACCCTGTGAAGTGCAACCAGGACCGGTTCGTGGTGGAGGACATAGTCGAATTCGGTTCACCGTTCCGGTTCGGGTTAGAAGCCGGGTCGAAGCCCGAGTTGCTCTTAGCCATGAGCTGTTTGTGCAAAAACGGCAACAGAGAAGCGTTTCTCGTATGCAATGGTTTCAAAGACAGCGAGTACATCTCACTCGCTCTTGTTGCGAGGAAGCTCGCTTTGAACACTGTTATTGTTCTCGAGCAAGAGGAAGAGCTTGATATGGTTGTTGATATCAGCAACAAGCTGTGCATTCGTCCAGTGATTGGTGTTCGTGCGAAGCTGAGGACAAAGCATTCGGGTCACTTTGGTTCCACTTCGGGGGATAAAGGGAAGTTCGGTTTGAATACTTCTCAGATTCTGCGTGTTGTGAAGAAGCTTGAACAATTGGGTATGCTTGATTGTCTTCAACTTCTGCATTTTCATATTGGTTCTCAGATTCCTTCCACTGCATTGCTTTCTGATGGGGTTGGAGAGGCTGCACAGATTTACTGTGAATTGCTTCGTTTGGGTGCCAATATGCGAGTCTTGGATATTGGTGGTGGTTTGGGGATAGATTACGATGGTTCAAAATCGAGTGAATCTGATCTCTCTGTTGCATATGGGTTAGAAGAGTATGCTGCAGCTGTTGTTCATGCTGTTAAGTATGTATGCGACCGAAGGAACGTGACGCACCCTGTGATTTGCAGTGAGAGTGGTAGAGCCATTGTGTCTCATCACTCGGTATTGATTTTCGAAGCCATCGGTGCAAGCTCATCGCAAAATGCAGCCCCTTCGTTGTCCTCAATTGGGCTGCAGTACTTGGTGGAGGGTCTCTCGGAGGAGGCTCGAACCGAGTATCAGAACATATCGGCTGCAACGATTCGCGGCGAGCATGAGGCCTGCTTGCTCTATACGGAGCAGTTTAAGAAGNGCTGCGTTGAGGAGTTCAAGCAAGGGAGTTTGGGGATTGAGCAGCTTGCTGCAGTTGATGGTTTGTGTGATTTGATCACGGAGACAATTGGGGTAAAGGATAGAGTTCAGAAGTACCATGTGAATCTCTCTGTCTTTACCTCGATTCCTGATTTCTGGAGCATAGACCAGATGTTTCCTATAGTCCCGATTCATCGCTTGGATGAGAAGCCAACGGCGAGAGGGGTGCTGTCGGATTTGACTTGTGATAGTGATGGGAAGATAGACAAGTTCATTGGGGGCGAATCGAGCTTGCCACTACATGAATTGGAAGGTGGTGGTGGTGGAGGGTACTATCTGGGAATGTTCTTGGGTGGGGCTTATGAGGAGGCGCTCGGTGGGATCCACAACTTGTTTGGTGCACCTAGTGTTGTGAGGGTGTTGCAGAGCGACGGCCCGCACGGGTTCGCGGTGACGCGCGCGGTGTCTGGGCCGTCGTGTGGGGACGTCCTCCGAGTGATGCAGCATCAGCCAGAGCTCATGTTTGAGACGCTCAAGCACCGCGCAATTGAGTTGTGTGGACAGCATGATGATGAAAATGAGGATGAAGAAAACAGTGGGATGAATGCTGAGGCGCTGGCAGCTAGCCTTGCACGCTCCTTTGACAACATGCCTTATCTGGTTGCATCCTCCTCTTGTTGCTTCAATGCTGTTAACAACGATGGCTTTTACTACTGCTCCAGTGATGATCTCAGTTTGGATTCTGCTTCTGCTGCTGGAGAAGATGAGCATTGGTCTTATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	394888	397029	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01583	E4.1.1.19	EC:4.1.1.19	Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0006527 arginine catabolic process

GO:0008295 spermidine biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008792 arginine decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002435.1	PF02784.11	Orn_Arg_deC_N	127	388	1.90E-55
Glyur000017s00002435.1	PF00278.17	Orn_DAP_Arg_deC	428	593	5.60E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.599
SRR1783600	control	54.214
SRR1783602	moderate drought stress	20.709
SRR1811619	moderate drought stress	20.379

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	74.556
DRR006520	Root Summer glycyrrhizin high producing strain	73.708
DRR006521	Root Winter glycyrrhizin high producing strain	4.813
DRR006522	Root Winter glycyrrhizin high producing strain	4.586
DRR006523	Root Summer glycyrrhizin low producing strain	75.178
DRR006524	Root Summer glycyrrhizin low producing strain	75.631
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.658

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	263.550
SRR2868004	Drought Stress (root)	327.979
SRR2967015	Control (root)	294.223

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	126.726
SRR9715740	Leaf	189.368
SRR9715741	Leaf	152.231
SRR9715739	Root	389.502
SRR9715742	Root	174.456
SRR9715743	Root	214.013

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	227.441
SRR8749028	MeJA induced 9h	78.024
SRR8749029	MeJA induced 9h	108.464
SRR8749030	Uninduced	168.508
SRR8749031	Uninduced	83.480
SRR8749032	Uninduced	88.295

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	121.227
SRR8400027	Control - Root	169.178