Gene detail information of Glyur000017s00002434 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16500.1 | 6.00E-09 | arginine decarboxylase 1 |
| NR | BAE71251.1 | 1.35E-18 | putative arginine decarboxylase [Trifolium pratense] |
| Swissprot | tr|Q43075|SPE1_PEA | 1.00E-16 | Arginine decarboxylase |
| trEMBL | tr|Q2PEV1|Q2PEV1_TRIPR | 5.00E-19 | Arginine decarboxylase {ECO:0000256|RuleBase:RU003740} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 391396 | 391665 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.751 |
| SRR1783600 | control | 7.010 |
| SRR1783602 | moderate drought stress | 4.255 |
| SRR1811619 | moderate drought stress | 3.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.619 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.859 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.433 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.807 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.066 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.479 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.222 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.962 |
| SRR2868004 | Drought Stress (root) | 16.878 |
| SRR2967015 | Control (root) | 16.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.477 |
| SRR9715740 | Leaf | 45.270 |
| SRR9715741 | Leaf | 27.399 |
| SRR9715739 | Root | 171.423 |
| SRR9715742 | Root | 48.302 |
| SRR9715743 | Root | 63.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.559 |
| SRR8749028 | MeJA induced 9h | 1.967 |
| SRR8749029 | MeJA induced 9h | 1.387 |
| SRR8749030 | Uninduced | 0.764 |
| SRR8749031 | Uninduced | 0.327 |
| SRR8749032 | Uninduced | 0.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.070 |
| SRR8400027 | Control - Root | 49.988 |