Gene detail

Gene detail information of Glyur000017s00002426

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36070.1	3.00E-134	translocase inner membrane subunit 44-2
NR	XP_004515202.1	0	PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2-like [Cicer arietinum]
COG	YP_003965135.1	1.00E-06	transporter Tim44 family protein [Ketogulonicigenium vulgare Y25]
Swissprot	tr\|Q5XF06\|TI442_ARATH	0	Mitochondrial import inner membrane translocase subunit TIM44-2 (Precursor)
trEMBL	tr\|I1JVJ8\|I1JVJ8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G12120.1}

Sequence

Transcript Sequence

>Glyur000017s00002426.1
AGAGAAGCTAGAAAATTAAAGAGAGAAAAACAGTTTGAATTCAATTCCAAATGGCAACCACAAAGCTGATTCGTGATTTGTTACTGTCCAAGCGATCTCTCTTTCTTCCTCACCAAGGTGGGAGGACGAGGTTGCCTTTGGTTTTGGCTGACAGGCGTAGCTATAGTGTCTTCAATGAGTTTTCGAAGAAGATTAAAGGTGAAGCTGTTAGAAACCCAGAATTTCAACAGTCTGTAAAGGAGCTGAAGGAAAAAGCAGAGGAACTGAAAGGGGTAAAACAAGAGCTGAAAGAAAAAACAAAGCAGAAAACTGAGAAGCTGTACAAACAGGTTGATGGAGTGTGGACAGAAGCTGAAGCTGCTGCGAAGAAGGTTTCTTACAACGTAAAAGAGAAAATTTCAGCTGCAACTGAGGAGGTGAAAGAAACTTTTGGGATAGGAAAGCAAGATTCTTCAGGATCAACTGATTCTTCGACAAAACAGGATGCTGATGCAAAGCAAGGAAGTCAGACAAAACCTGAGGAAGAGAAAAACCAGCAATTTGGGTCTAATGCTGATGCAGAGTCATTGTTTGGCAAATTTAAGTCAACAGTTTCCTCTCCGAATGTTTCTGCTGCCTTCCAAAAATTAAAGGATGCGAAAATAGTCAACATAACCAAGAAAGGTTATGACATAATAAAGGAGGAGTTAAGTAGTAACCCAACCAAGAGACAACGCGTTCCTTCCACATCTAGTGGCGAAACAAGTACAAGAACTGAACTTGTCGTTATGCCTTCTAAACAATCTTGGTGGAGTAAGAAGTTTGACGAGTTCAGGGAAAAGGTGAAAAGCCATCCTGCATCCAAGCGGTTCATTAAGTATAGTGACCCAGTAAAGACAAAGGGCCAGGAGATAGTAGAGGACTTGCGGGAAAGATATGAGACAAGTGACAACCCCCTTATTCACAAAATACAGGATATCAACGATAGCATGTTTCAAGAGACAGATGCGGCAATTTCATATAAGGAAATACGCCAGCGGGATCCTTATTTTTCCTTACCTGAATTTGTGGGGGAAGTGCAGGATGCAATAAAACCAGTGCTTAATGCTTACATCAAGGGAGACGTTGAAATACTGAAGAAGTACTGCAGCCCTGAGTTGATTGAACGTTGTAAAGCAGAACATAATGCTTACCGAAGTCATGGTATCTTCTTTGATAACAAGATCCTGCATGTGTCCGAGGTGGATGTAAGAGAGGCCAAGATAATAGATTCGTCTCCAGTTATTATTGTATCGTTTCAAACACAGCAAATCTATTGTGTACGGGATAGGAATGGGGCAATTACAGAAGGAGGCAAGGATACAATCCACNCTGTATTGTATCATTGGGCATTGCAACAAATGGACCAACAAGATCAAGGAGAGGATGCTATTTACCTAATGTGGAGACTGAGAGAGATGCATCAGCAAGGCATGCAAGCCCTCATCTAGTTTTTCACATTCTTGCCTTTTTAGGGATTTGTATAATCGAGCCTTTGCTACATATTCACGGATTTCATTTNTTGGGGCTAAATTTTTATATCCCGTTGTCGCTGATACATCCTTTTTATTATTATTTTTGTTTATACTGATGATATTGAAAAAATAACGTGCCCTTGTGAGTTCATTTATGTAGAAGATATAANCTAGCGTGATGATTGGAAAATCACGACATTTTTGCTGTGCCAGAAGTGGNAAATTGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	330595	336631	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0038032 termination of G-protein coupled receptor signaling pathway

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002426.1	PF04280.10	Tim44	315	465	3.30E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.897
SRR1783600	control	18.012
SRR1783602	moderate drought stress	14.889
SRR1811619	moderate drought stress	14.587

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.876
DRR006520	Root Summer glycyrrhizin high producing strain	24.460
DRR006521	Root Winter glycyrrhizin high producing strain	25.988
DRR006522	Root Winter glycyrrhizin high producing strain	24.880
DRR006523	Root Summer glycyrrhizin low producing strain	26.072
DRR006524	Root Summer glycyrrhizin low producing strain	25.889
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.472
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.294

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.501
SRR2868004	Drought Stress (root)	30.353
SRR2967015	Control (root)	30.229

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.471
SRR9715740	Leaf	19.671
SRR9715741	Leaf	21.622
SRR9715739	Root	0.985
SRR9715742	Root	13.211
SRR9715743	Root	11.145

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	96.545
SRR8749028	MeJA induced 9h	46.582
SRR8749029	MeJA induced 9h	71.001
SRR8749030	Uninduced	39.166
SRR8749031	Uninduced	45.917
SRR8749032	Uninduced	28.541

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.675
SRR8400027	Control - Root	23.241