Gene detail information of Glyur000017s00002423 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02955.1 | 2.00E-137 | maternal effect embryo arrest 12 |
| NR | XP_003539004.1 | 0 | PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Glycine max] |
| Swissprot | tr|Q5XVF0|MEE12_ARATH | 8.00E-169 | TATA box-binding protein-associated factor RNA polymerase I subunit B |
| trEMBL | tr|I1LJ67|I1LJ67_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G11890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 321046 | 324562 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.627 |
| SRR1783600 | control | 2.684 |
| SRR1783602 | moderate drought stress | 4.306 |
| SRR1811619 | moderate drought stress | 4.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.889 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.056 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.051 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.828 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.854 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.213 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.366 |
| SRR2868004 | Drought Stress (root) | 6.368 |
| SRR2967015 | Control (root) | 6.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.364 |
| SRR9715740 | Leaf | 2.121 |
| SRR9715741 | Leaf | 1.584 |
| SRR9715739 | Root | 0.951 |
| SRR9715742 | Root | 2.330 |
| SRR9715743 | Root | 2.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.380 |
| SRR8749028 | MeJA induced 9h | 4.050 |
| SRR8749029 | MeJA induced 9h | 2.599 |
| SRR8749030 | Uninduced | 1.303 |
| SRR8749031 | Uninduced | 1.166 |
| SRR8749032 | Uninduced | 0.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.514 |
| SRR8400027 | Control - Root | 4.405 |