Gene detail information of Glyur000017s00002421.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39010.1 | 1.00E-171 | glycosyl hydrolase 9B18 |
| NR | XP_003537838.1 | 0 | PREDICTED: endoglucanase 24 isoform 1 [Glycine max] |
| COG | YP_002464713.1 | 4.00E-72 | glycoside hydrolase family protein [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|Q93YQ7|GUN24_ARATH | 0 | Endoglucanase 24 (Precursor) |
| trEMBL | tr|K7LP57|K7LP57_SOYBN | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 314279 | 319466 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01179 | E3.2.1.4 | EC:3.2.1.4 | Starch and sucrose metabolism | map00500 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002421.1 | PF00759.14 | Glyco_hydro_9 | 25 | 459 | 2.90E-141 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.836 |
| SRR1783600 | control | 6.595 |
| SRR1783602 | moderate drought stress | 3.128 |
| SRR1811619 | moderate drought stress | 3.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.883 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.753 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.470 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.458 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.144 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.798 |
| SRR2868004 | Drought Stress (root) | 5.833 |
| SRR2967015 | Control (root) | 6.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.572 |
| SRR9715740 | Leaf | 0.060 |
| SRR9715741 | Leaf | 0.075 |
| SRR9715739 | Root | 3.219 |
| SRR9715742 | Root | 3.486 |
| SRR9715743 | Root | 3.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.252 |
| SRR8749028 | MeJA induced 9h | 0.429 |
| SRR8749029 | MeJA induced 9h | 0.627 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.785 |
| SRR8400027 | Control - Root | 14.777 |