Gene detail

Gene detail information of Glyur000017s00002417.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34680.2	2.00E-38	GATA transcription factor 3
NR	XP_003607047.1	2.95E-142	GATA transcription factor [Medicago truncatula]
Swissprot	tr\|Q9FH57\|GATA5_ARATH	6.00E-51	GATA transcription factor 5
trEMBL	tr\|G7JJU1\|G7JJU1_MEDTR	1.00E-142	GATA type zinc finger transcription factor family protein {ECO:0000313\|EMBL:AES89244.1}

Sequence

Transcript Sequence

>Glyur000017s00002417.1
ACGAACCTGCCTTTCATTTCAGTGCTTTCCAAACCAAAGGAAACTCTTGTGCGGTTTCCCCTCTCTGTCTTCACCACTTTTAATTTTTTTTTATCAGGTAGAAACTAGGAAAAGAAAAGAGAAATGGAAGTTGCGGTGGCGAAAGCATTGAAACCAAGCTTGCGGACAGAGTCTATTTTCCAGCAAGCAATTTGCGAAGAGATTCTGTGCTTGAACGCAAACAACGTTGTCGTCGGCGAAGATTTCTCGGTGGACGACCTCCTTGACTTCTCCAACGGCGGCGAATTCCAACATGTCGGAAAAGAAATTGANGATATTTACGAAGAAGAAGAAGAGGAAGAGGAGGAAGACCAGGAAAAAGACAGCACCTCCTTCGGTTCTTCACAGGACCGAACAGAAGACGACGGAAACTCCAATTCCACCGGATTTTCCGGCACCGGAGATTCCGACTCCATTTTCGCCGGCGGTTTGGCAGTTCCTGCGGATGATGTTGCGGAGTTGGAGTGGGTTTCTCACTTTGTGGACGATTCTCTACCGGAACTCTCTCTATTGTACCCAGTTCGGGCCGAACCGGTACCTAAACCGGGCCCATCCAAAACTAGAAAGCCCAGAACCACCAAGACTAGAAAGCCCAGCCGCCACGTGTGGTCCTTCTTCAACCCCACNGGTTTCGGCGAGCCGGCGGCGAAGAAGCAGAAGAAAAGGACCGAGGNCACCGGTGGGACCCACCAGTTTCAGAGGCGGTGCAGCCACTGCCAGGTGCAGAAGACGCCACAGTGGAGAACCGGTCCGCTTGGACCCAAAACCCTTTGCAACGCTTGCGGAGTTCGTTACAAGTCCGGTAGGCTTTTCCCGGAGTATAGACCGGCGTCGAGCCCGACTTTTTCCGGCGATGTTCACTCGAATAGCCACCGTAAGGTTTTGGAAATGAGGCGGAGGAAGGAGATGGCTGAACCGGAAACCGGTCTGGACCGGAATCAAATGGTCCCGAGTTGCTGATTTTTTTTTCCTAGTGCGAAAAAAATAGTGGTTAATTATAGGTTAGATAATATAATTAGGTACTATAGGTCAACCAACCGGTTCAGAACCGGTNTGCTTTTTGTAACATAGTCAGTGGTTTTAGTGGTACTACTAGTCAGCTAAGGCAGGCAGGTAACGGACATTAGGAAGAAAGCATTGATTGTTTTATTATTTTTATGTCCCCATTTTCCTAGCGCAGTTAATTTATTTAATGGAATATAGTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	293951	295745	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0045893 positive regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0008270 zinc ion binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002417.1	PF00320.22	GATA	208	241	2.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.486
SRR1783600	control	16.789
SRR1783602	moderate drought stress	15.963
SRR1811619	moderate drought stress	15.896

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.467
DRR006520	Root Summer glycyrrhizin high producing strain	32.626
DRR006521	Root Winter glycyrrhizin high producing strain	105.590
DRR006522	Root Winter glycyrrhizin high producing strain	101.845
DRR006523	Root Summer glycyrrhizin low producing strain	70.201
DRR006524	Root Summer glycyrrhizin low producing strain	69.266
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.271
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.595

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.481
SRR2868004	Drought Stress (root)	42.995
SRR2967015	Control (root)	48.847

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.225
SRR9715740	Leaf	148.460
SRR9715741	Leaf	110.659
SRR9715739	Root	77.924
SRR9715742	Root	58.585
SRR9715743	Root	60.118

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.772
SRR8749028	MeJA induced 9h	21.093
SRR8749029	MeJA induced 9h	25.139
SRR8749030	Uninduced	17.342
SRR8749031	Uninduced	11.491
SRR8749032	Uninduced	35.832

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.100
SRR8400027	Control - Root	38.076