Gene detail

Gene detail information of Glyur000017s00002412

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21340.1	0	MATE efflux family protein
NR	XP_004507499.1	0	PREDICTED: MATE efflux family protein 4, chloroplastic-like [Cicer arietinum]
COG	YP_003706607.1	1.00E-20	MATE efflux family protein [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q8W4G3\|MATE4_ARATH	0	MATE efflux family protein 4, chloroplastic (Precursor)
trEMBL	tr\|A0A072ULA7\|A0A072ULA7_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000017s00002412.1
ATGGCGCACAAACTCTCACTACACTTGATTCGCACTCTCCACACTTCTCCCAACCTCACATCATCACCAACACACACACACTCAAGCCACCACTTACCTCTTCATTTCCTCCTCGCACCTTCCCTTCCCAAGAGCGCCATTATTCATTCAAACCAATGCCTCGCGGCGTCGAGGCACCGTCGCAACGGGTTCGTAACCGCTCGAGCAGTTCAAAATCAAGAGGACTTTGCCTCTGATGAAGTGGACAAAGAGGAAGAACAAGCGGNGAGAGAGGGCGAGAAAATGGAACTAGCAGAGCAGAGTATATGGGTTCAGATGAAGGAGATTGTCTTATTCACTGGGCCTGCAACTGGGCTTTGGTTATGTGGGCCGGTGATGAGTCTCATCGATACTGCAGTTGTTGGCCAGGGAAGCTCACTTGAGCTTGCTGCTTTAGGTCCTGCTACGGTTTTTTGTGATTACCTGAGCTACTCGTTCATGTTTCTGTCAATTGCTACTTCCAATATGGTTGCTACCGCCCTTGCTAAACAGGATAAGGAGGAAGTGCAGCATCACATATCTGTCTTACTTTTTGTTGGATTAGCATGTGGCTTGGTGATGCTTTTGTTCACAAGGTTATTTGGCGCAGCAACACTTGCTGCTTTTACTGGGCCAAAGAATGTACATATAGTACCTGCAGCTAATACTTATGTCCAGATTCGAGGTTTGGCATGGCCCGCTTTACTTATTGGATCAGTTGCTCAGAGTGCAAGTCTTGGTATGAAAGATTCCTGGGGACCCTTGCTGGCTTTGGCTGCTGCCAGCTTTATAAATGGGACTGGTGATATACTTCTGTGCAGCTTTTTAGGCTATGGGATTGCTGGGGCTGCATGGGCTACGTTGGCATCACAAGTTGTTGCTGCATATATGATGAGCCAAACTCTAAACAAGAAGGGATACAATGCATTTACCTTCTCTATTCCTTCAGGGAAGGAATTTCTGACAATACTTAGTCTTGCTGCTCCTGTATTTCTGACATTGATGCTAAAGGTGGCTTTCTACTCTCTACTTATATACTTTGCTACGTCAATGGGTACACATACAATGGCTGCTCATCAAGTCATGGTTCAAATCTACATGACATGCACAGTATTTGGTGAACCTCTCTCCCAAACTGCTCAATCATTTATGCCTGAGTTGATGTGTGGAGTAAATCAGAGTTTGACAAAGGCTCGATCGCTTCTAGGGTCTCTTGTGACTATTGGAGCTATACTTGGATTGTTTTTTGGGATTGTTGGAACTTCTGTTCCTTGGTTATTCCCCTACATTTTTACTCCCGATCAGATGGTCATCCAGGAGATGCACAGGATACTGATTCCATACTTTTTAGCAATAGTCGTGACGCCTGCAACTGTCAGCCTGGAGGGAACATTGCTGGCGGGACGGGATCTAAGATTTATAAGTTTGTCAATGAGTGGATGCTTTTGTCTGAATGCTCTAATCTTAAGTAACAGATATGGTTTGCAAGGCTGTTGGTTTGCCCTTGCTGGATTTCAGTGGGCTCGGTTTTTAGTGGCCCTTTTGCGCCTTCTCTCTCCCAATGGCATTTTATACAAGGAAGATTTAGGCCAATATGAGCTACAAAAGTTGAAGACTGCCTAGTTTTGGAACTCCATTTTATTTGTAGTTCATGATACATTATACAAATAGAAGCATGTTGTCTGTTGCTTGCAAATGTTATTAAATGTGTTACAGAATAGGCATTCATTTCAAATTAAGTGACAACTTACATTACATCNATTCAATGTTGACACAATTCAACGTAGTACCGCGTGACTCTTGTTGGAATCCAAATGGGGAAATGGGGGATGTTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	263914	269109	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002412.1	PF01554.13	MatE	125	267	2.80E-11
Glyur000017s00002412.2	PF01554.13	MatE	125	222	5.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.447
SRR1783600	control	0.482
SRR1783602	moderate drought stress	0.394
SRR1811619	moderate drought stress	0.427

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.212
DRR006520	Root Summer glycyrrhizin high producing strain	0.266
DRR006521	Root Winter glycyrrhizin high producing strain	0.465
DRR006522	Root Winter glycyrrhizin high producing strain	0.521
DRR006523	Root Summer glycyrrhizin low producing strain	3.341
DRR006524	Root Summer glycyrrhizin low producing strain	3.369
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.360
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.333

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.530
SRR2868004	Drought Stress (root)	4.015
SRR2967015	Control (root)	2.838

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.115
SRR9715740	Leaf	20.916
SRR9715741	Leaf	11.839
SRR9715739	Root	3.350
SRR9715742	Root	2.401
SRR9715743	Root	2.474

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.746
SRR8749028	MeJA induced 9h	2.244
SRR8749029	MeJA induced 9h	1.246
SRR8749030	Uninduced	0.837
SRR8749031	Uninduced	0.041
SRR8749032	Uninduced	0.191

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.597
SRR8400027	Control - Root	4.738