Gene detail

Gene detail information of Glyur000017s00002410

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21340.1	2.00E-145	MATE efflux family protein
NR	XP_003607029.1	0	Enhanced disease susceptibility [Medicago truncatula]
COG	YP_003706607.1	9.00E-09	MATE efflux family protein [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q8W4G3\|MATE4_ARATH	0	MATE efflux family protein 4, chloroplastic (Precursor)
trEMBL	tr\|G7JJS3\|G7JJS3_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000017s00002410.1
ATGGTTGGAGGTCACGAAGAAGAAGACGGAATCAGTGAAGAAGTGGGGAGAGAGAGCGAGAAAAGAGAAGAACTAGCGGAGCAGAGCATGTGGAATCAGATGAAGGAAATGGTCAAGTTTACAGGACCAGCCATGGGGCTTTGGTTATGTCCTGCTACGGTTGTTTGCGATTACATGACCTTAACGTTCATGTTTCTGTCCGTTGTTACTTCCAATATAATTGCTACTGCCTTAGCTAAACAGGATAGAGAGGACGTGCAGCATCACATATCTGTCTTGCTTTTTATTGGGTTGGCATGTGGCTTCGTGATGCTTTTGGCTACAAAGTTATTTGGCACAGCAACACTCACTGCNTTTACTGGGCCAAAGAATGTGCATGTAGTACCTGCAGCCAATTCTTATGTCCAGATTCGAGCCTTGTCGTGGCCTGCTTTACTTGTTGGATGGGTTGCGCAGAGTGCAAGTCTTGGTATGAAGGATTCCTGGGGACCCTTGAAGGCTTTGGCTGCTGCCAGTGTTGTAAAGGGAATTGGTGATATACTTTTGTGCAGCTGTTTAGGCTATGGTATAACAGGTGCTGCATGGGCTACAATGGTAGCACAACTTGTTGCTGCATATATGATGATTCAAACTCTAAACAACAAGGGATACAATGCGTTTGCCTTCTCCATTCCTTCAGGGAAGGAATTTCTGACAATACTTGGTCTTGCTGCTCCTGTATATTTGACATCAATATCAAAGGTGGCTTTCTTTTCTCTACTTATATATGTTTCTACAACAATGGGTACACAAACAATGGCCGCTCATCAAGTTCGNTCTATTCCTTTCTCTCATTTTGTCATGATTCAAATCTACATGGCATTTACAGTGTGGGGTGAACCTCTCTGCCAAACTGCTCAATCATTTATGCCTGAGTTGATGTATGGAGTAAACTGTAGTTTGGCAAAGGCCCGATTGCTTCTAAGGTCTCTTGTAGTTATTGGAGCTGTACTTGGATTGTTGTTGGGGATTGTTGGAACATCTCTTCTTTGGTTATTCCCATACCTATTTACACCTGATCAGATGGTCATCCAGAAGATGCATAGGACACTGATTCCATTCTTTNTAGCGCTAGTTGTGACACCCCCTACTCGCTGCCTGGAGGGTACATTGCTGGCAGGACAGGATCTAAGATTTATAAGTTTGTCAACGTGTGGATGCTTTTGTCTGGGTGCTCTAGTATTACTGATCTTCAGTAGATATGGTCTGCAAGGAAGTTGGTTTACCCTTGCTGGATTTCAGTGGGCTCGGTTTGCAGTGGCCCTTCTGCGCCTTGTATCTCCCAATGGCATTTTATTCTCGGAAGAGGCCAGTATAAGCCAAAAGTTGAGGACTGCCTAGTTTCGAGGAAACGTAACGTACATGTATGAATGCATTTGCATGAAAATTTGGTGTGCTCGCTGAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	254825	259575	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002410.1	PF14667.1	Polysacc_synt_C	135	246	3.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.152
SRR1783600	control	24.587
SRR1783602	moderate drought stress	13.828
SRR1811619	moderate drought stress	13.400

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.341
DRR006520	Root Summer glycyrrhizin high producing strain	10.018
DRR006521	Root Winter glycyrrhizin high producing strain	0.872
DRR006522	Root Winter glycyrrhizin high producing strain	0.708
DRR006523	Root Summer glycyrrhizin low producing strain	2.725
DRR006524	Root Summer glycyrrhizin low producing strain	2.850
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.837
SRR2868004	Drought Stress (root)	14.189
SRR2967015	Control (root)	7.658

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.640
SRR9715740	Leaf	0.084
SRR9715741	Leaf	0.052
SRR9715739	Root	14.076
SRR9715742	Root	13.073
SRR9715743	Root	13.569

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.319
SRR8400027	Control - Root	42.016