Gene detail

Gene detail information of Glyur000017s00002409

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21340.1	8.00E-170	MATE efflux family protein
NR	XP_003607027.1	0	Enhanced disease susceptibility [Medicago truncatula]
COG	YP_003706607.1	2.00E-22	MATE efflux family protein [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q8W4G3\|MATE4_ARATH	0	MATE efflux family protein 4, chloroplastic (Precursor)
trEMBL	tr\|G7JIP1\|G7JIP1_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000017s00002409.1
GAAAATTATCATTTATTACCCATAGAAAAGAAAAGTTTCATTCCATCATCTCACGCAACTGTGAACCGTGTGTTTGGTGGGAGGGACTGACTTTGTGGCATTTCCCTTCCCTCCACCACCAAACCACGGAACAAAAAAAATGGCATTCAAACTCCCATCACTAACAACTCTCCCTCGCTCTCTTCACACTCCTCCCCGCCAAAACCCTAATCCATTACCACCTTCTCCCTCTCCAACAGTATCAAACCGTCCTTACCTTCCTCCTCTTCACCACCATTTCTTCGCACCTTCCCTTCCTCCTCCAAATCTAAGCCTCTCAGCTTCCACATTCCATCGCACTCGGTTCGTCACCGCTCGGGCGATTCGAGGTCAAGAACAAGACCTCACCACCGGCGATGACCTCCCAGCCGAACACGAAGGCCGAATCAGCAAGGTTTCCGAAGAAGAAGAAACAGAAACAGTTACACGGGGTGAGAAAAAGGAACTAGCGAAGCAGGGTATATGGATTCAGATGAAGGAAATTGTCAAGTTTACAGGTCCAGCAACTGGACTTTGGATATGTGGACCGCTAATGAGTCTCATCGATACTGCTGTCATTGGTCAGGGAAGCTCGATTGAGCTTGCTGCTCTAGGTCCTGCTACAGTTGTTTGTGATTACATGAGCTATGTGTTCATGTTTCTATCAGTTGCTACCTCTAATATGGTTGCTACTGCCCTTGCTAAACAGGATAGAGAAGAAGTGCAGCATCACATTTCTGTCTTGCTTTTTGTTGGGTTAGCTTGTGGCTTCATGATGCTTTTGTTCACAAGGCTATTTGGTGCTGCAACACTCACTGCTTTCACTGGATCAAAGAATGCACAGATAGTACCTGCAGCTAACACTTACGTACAGATTCGAGGCTTGGCATGGCCTGCTTTACTTGTTGGATGGGTTGCTCAGAGTGCAAGTCTTGGTATGAAAGATTCGTGGGGACCCTTGAAAGCTTTGGCTGCTGCTAGTGTTATAAATGGCATTGGTGATATAATTTTGTGCACCTATTTAGGCTATGGAATTGCAGGGGCTGCATGGGCTACAATGGCATCACAAGTTGTTGCTGCTTATATGATGATGCAAACTCTAAATATGAAAGGATACAATGCCTTTGCCTTCTCCGTTCCTTCGGGGAGGGAACTTCTGATGATACTTGGGCTTGCTGCTCCCGTATTTATGACAATGATGTCAAAGGTCGCTTTCTACTCACTACTTATATATTTTGCAACATCAATGGGTACACATACAATGGCTGCTCATCAAGTCTTGCTTCAAACCTTTTCCATGTGTACAGTATGGGGTGANCCTCTCTCCCAAACTGCTCAATCATTTATGCCCGAATTGATATACGGAGTAAATCGGAGTTTGTCAAAGGCCCGTTTGCTTCTAAGGTCTCTTGTGATAATTGGAGCTATACTTGGATTGTTGTTAGGAATGGTTGGAACATTAGTTCCTTGGTTATTTCCCTACATTTTTACACCTGATCAGATGGTCATCAAGGAGATGCATAGGGTGCTGATTCCATATTTTGTAGCACTGGCTGTGACACCCCCTACTCACAGCCTTGAGGGCACGTTGCTGGCTGGAAGAGATCTAAGATATATTAGTTTGTCAATGAGTGGATGCCTTTGCGTGGGTGCACTAATATTATGGGTAACGACCTTTTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	248914	253748	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002409.1	PF01554.13	MatE	143	292	7.20E-12
Glyur000017s00002409.2	PF01554.13	MatE	143	292	1.10E-11
Glyur000017s00002409.3	PF01554.13	MatE	143	292	9.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.630
SRR1783600	control	41.155
SRR1783602	moderate drought stress	38.581
SRR1811619	moderate drought stress	37.956

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.962
DRR006520	Root Summer glycyrrhizin high producing strain	14.440
DRR006521	Root Winter glycyrrhizin high producing strain	13.331
DRR006522	Root Winter glycyrrhizin high producing strain	13.140
DRR006523	Root Summer glycyrrhizin low producing strain	11.733
DRR006524	Root Summer glycyrrhizin low producing strain	12.275
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.004
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.419

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.708
SRR2868004	Drought Stress (root)	26.313
SRR2967015	Control (root)	23.531

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.832
SRR9715740	Leaf	15.492
SRR9715741	Leaf	12.928
SRR9715739	Root	10.786
SRR9715742	Root	14.535
SRR9715743	Root	13.951

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.420
SRR8749028	MeJA induced 9h	32.365
SRR8749029	MeJA induced 9h	20.846
SRR8749030	Uninduced	17.579
SRR8749031	Uninduced	14.364
SRR8749032	Uninduced	11.902

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.670
SRR8400027	Control - Root	35.293