Gene detail

Gene detail information of Glyur000017s00002403

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21370.1	3.00E-151	xylulose kinase-1
NR	XP_004507493.1	0	PREDICTED: xylulose kinase-like isoform X1 [Cicer arietinum]
COG	YP_007142415.1	4.00E-145	carbohydrate kinase, FGGY [Crinalium epipsammum PCC 9333]
trEMBL	tr\|G7JIN0\|G7JIN0_MEDTR	0	Xylulose kinase-like protein {ECO:0000313\|EMBL:AES89213.2}

Sequence

Transcript Sequence

>Glyur000017s00002403.1
ATGATAGGCGCTATTTCAGTAACCCATCCAGCAAGCACCATTGTAGCATATTNGACACCAATTCGAAAATGTGGTACTGGAAATGGGTTGTGTAACAAGGTAAGTAAACCAAGGGCAATAGTATCAATGTCTCTCGGAAACGGAAATACTAATAATAAGAAGAAGGCAGAAGCGAGTGTGGGAGCAGGTGAAAGGCTCTATCTCGGGTTGGACTTCGGCACGTCTGGTGCCAGGTTTGCCATTATTGACAAGGCTGGGACAATTCAGGCTGAGGCTAAGAGAGAGTATCCTCTGTACTCGAGTCATGTCACTGGGTACGCTCATGGAAGGAGACATTGTTTTCGTTGCTTGAAGATGTCCCACTCAACCTTCGCAAACACATTGTCTCCATTTCTATTGATGGCACATCTGCAACTACTATCATTTGATACAGGAGAACCGTTGTGGAGACCTTTTCTTTACAACGAGAGTTGCCTTGATGCACTACCCACGGTAAAATCTATTGCCCCTCCAAACCACACAGTGTGCTCTGCATCATCCACTCTGTGTAAGCTAATCTCATGGTGGAATCGTGATGACCCAAACAAAAAATCTGCCCTGTTGTTGCACCAAGCTGATTGGCTTTTGTGGCTTCTTCATGGAAAGCTTGGAGTTGGCTATGATCCTGAAGTTGACTCATATCCATCATGGCTAGTCTCTCAACCATATTCTCATCTTTTACCTTTAGTTGTTGCACCAGGAACTCCAATTGCTTCTTTAAAGGAGGAAATTAGAAATAAATTTGGTTTTCAAAAGGACTGTGTTGTNTGTACTGGAACCACCGACAGTATAGCTGCATTTCTTGCAGCTCGTGCTACTCAACCTGGAGAAGCTGTCACTTCATTGGGTTCAACACTTGCTATTAAACTACTAAGCAACACGAGAATTGATGATTCTCAGTTTGGGGTGTATAGTCATCGCCTTGATGATAAATGGCTTGTTGGCGGTGCTTCAAACACTGGTGGAGCTGTTCTTAGACAGCTATTCACCGATGATCAATTGGAGAAACTGAGTGAACAAATCAATCCCTCACAAACCTCTCTTCTGGACTACTATCCTCTGCCAAAAGCAGGTGAAAGATTTCCAATAGCAGATCCAAATTTGGCTCCAAGGCTACTTCCACGTCCAGAAAATGATGTTGAATACTTGCATGGGATTTTGGAATCCATTGCACGTATAGAGGCAAAGGGGTATGAGTTGCTAAAGGAGCTAGGTGCAACCCAGGTGGATCAAGTTTTCACAGCAGGTGGAGGTGCCAAAAATGAGAAGTGGACAAAGATACGAGAGAGGGTGCTTGGTTTGCCTGTGAGTCGTGCAAATCAAACAGAGTCTGCCTATGGAGCTGCATTGTTGGCAATAAAGGGTGATCAAGTAAATATTTTGTGAACTTCACGANGGTGCTTTGAAGAGCATTTTTTTTTTATTATCTTTCAAAATGTTGTTTCTGAAGGGGGGAAAAAATGAAATTTATCATGGAAGAGGGTGGAAGAATGTTTCAAAACGGTGTTACATATCAGTAACATCTTAAGACCTGTTTAAAATCTTGTAGGTGTTGGTCTGTTTGAAAAACTAAATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	225077	229554	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002403.1	PF02782.11	FGGY_C	291	466	2.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.433
SRR1783600	control	0.428
SRR1783602	moderate drought stress	0.148
SRR1811619	moderate drought stress	0.121

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.892
DRR006520	Root Summer glycyrrhizin high producing strain	0.955
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.204
DRR006524	Root Summer glycyrrhizin low producing strain	0.199
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.683
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.628

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.027
SRR2868004	Drought Stress (root)	0.155
SRR2967015	Control (root)	0.132

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.493
SRR9715740	Leaf	13.993
SRR9715741	Leaf	4.228
SRR9715739	Root	0.057
SRR9715742	Root	0.259
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.423
SRR8749028	MeJA induced 9h	0.287
SRR8749029	MeJA induced 9h	0.294
SRR8749030	Uninduced	0.713
SRR8749031	Uninduced	0.083
SRR8749032	Uninduced	0.035

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.142
SRR8400027	Control - Root	1.396