Gene detail

Gene detail information of Glyur000017s00002391.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16440.1	0	Minichromosome maintenance (MCM2/3/5) family protein
NR	XP_004507486.1	0	PREDICTED: DNA replication licensing factor mcm4-B-like [Cicer arietinum]
COG	YP_001737781.1	3.00E-131	MCM family protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|Q0WVF5\|MCM4_ARATH	0	DNA replication licensing factor MCM4
trEMBL	tr\|B0LUQ7\|B0LUQ7_PEA	0	Minichromosome maintenance 4 protein {ECO:0000313\|EMBL:ABY81650.1}

Sequence

Transcript Sequence

>Glyur000017s00002391.1
CACACACACACTCTCTCTGTGATATTCTCTTGGCGCGTTCACTCGGCACTAACCAAGCCACAGAGCCATGGCTTCCGATTCCTCTCCTCCGCATTTCAACAACGGCCCTTCTTCCCCAGACGATTCCGTTTCAAGCCCTATCGGCAACACTTTCTCTTCTCCCGGCCGGAGACGCCGCCGCCGATCTTCCACCCCATCAGCATTCGGAACCCCGCCGCCGCACCGGTCCCGATTCGCCTCCTCCGATGGAACCCCAACGCCGTCGCGACTCCGGCAAAGGGGCAGCGCCGGCGGCGGAAGCGTCCCCGCCACGCCCACCACCACCTCCGACGACGTTCCTGTGTCGTCTGACGGCGGCGTCGGTTACGACATGGANGACGCGAGGCCTACCTTCGTGTGGGGTACCAACATAAGCGTGGAAGACGTGAACGACGCGATTCAGAGGTTTCTGAAGCACTTCAGGGAAGCTTCTTCAACTCAGGGTGACGGTGACGGTTTGGATTTGAACACCGAAGGGATGTATGAGAAATTGATCAAACAGGTGATTGAGTTTGAAGGGGATTCTCTTGACGTCGATGCGCGTGACGTGTTTGATCATGACCCTGATTTGTACACCAAGATGGTAAGGTACCCACTCGAGGTTCTCGCGATTTTTGACTTGGTTTTGATGAACATGGTTGTCAGAATCAAACCCAAGTTCGAGAAGCACATTCAAACTCGGATTTTCAATCTCAAAACCTCTACTTCGATGAGAAACTTGAACCCTTCTGATATCGAGAGGATGGTGTCGATGAAGGGAATGATTATACGATGTAGTTCAATTATACCGGAAATTAAGGAAGCTATATTTAGGTGTCTCGTTTGTGGATTCTGCTCTGACCCAGTTCCTGTGGACAGAGGACGAATAAATGAACCTACTGTATGCTTGAGGGAAGAGTGTCAGTCCAGGAACTCCATGACACTGGTTCACAACCGATGCAGCTTTACTGATAAGCAAATTGTGAGGCTTCAAGAGACACCTGACGAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGCTGGTGGATACTGGAAAACCAGGTGACAGAATTGAGGTGACTGGTGTATATAGGGCTATGAGTGTCAGGGTGGGACCAACTCAGAGAACTGTTAAGTCGTTGTTCAAGACGTATATTGATTGTCTTCACATAAAGAAGAGTGATAAGTCCCGGATGACGATAGAGGATGCCATGGAGATTGACAATGGCCCGGGCAGAAATGCAGAAGTTCTCTTTGGCGAAGAAAGGGTGGCTCAACTGAAGGAACTCTCAAAACAACCAGATATATATGAAAGACTGACGAAGTCATTGGCGCCAAACATTTGGGAGCTAGACGATGTTAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTGGCAACTGGTGCTAGCTTCCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGGACGAGCAAGTCCCAGCTACTTCAATACATACACAAACTATCCCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCAGCTGTTGGATTGACTGCTTATGTGGCCAAAGACCCTGAAACAGGCGAAACTGTTCTTGAGAGCGGTGCCCTAGTTTTGAGTGATCGAGGTATCTGCTGCATAGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTGTCAATAGCAAAGGCAGGCATTATTGCTTCCCTAAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCTCTCTTTTGTCCAGGTTTGATTTAATTTACTTGATTCTTGACAAGGCTGATGAACAGACTGACAGGCGACTTGCCAAACATATTGTTTCCCTACACTTTAGGGATCCCGAGAACTTGGAGCACGATGTGTTGGACCTCTCCACACTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAGCTGTCAGATGAAGCTGCTGAAGAATTGACTAGAGGCTATGTGGAAATCAGAAGAAGAGGAAATTTTCCTGGAAGTAGCAAAAAGGTGATAACAGCAACTCCGAGGCAGATTGAGAGTCTGATACGCCTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATGGGTGGAAAAGCATGATGTAATGGAGGCATTTCGGCTTCTTGAAGTTGCGATGCAGCAGTCTGCAACTGATCACTCTACTGGTAGCTATCCAAACAAGCCTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGTGAAAGGATGAGACGAGAAAGTTTGATACAAACAACACGCAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCCATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAGAACACGGGCAGCGAAATTCATCTCAATGATCTGAGGAATGCGATTGCTACCCTCTCCAGCGAAGGATTTGTTACCATGCATGGTGACAGCGTAAAAAGATCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	148813	154428	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02212	MCM4, CDC54	EC:3.6.4.12	DNA replication	map03030
			Cell cycle	map04110
			Cell cycle - yeast	map04111
			Meiosis - yeast	map04113

Gene Ontology

biological_process

GO:0006260 DNA replication

GO:0006270 DNA replication initiation

cellular_component
GO:0042555 MCM complex

molecular_function

GO:0003677 DNA binding

GO:0003678 DNA helicase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002391.1	PF14551.1	MCM_N	122	244	3.00E-18
Glyur000017s00002391.1	PF00493.18	MCM	414	739	7.80E-135

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.631
SRR1783600	control	12.729
SRR1783602	moderate drought stress	5.622
SRR1811619	moderate drought stress	5.626

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.347
DRR006520	Root Summer glycyrrhizin high producing strain	7.228
DRR006521	Root Winter glycyrrhizin high producing strain	2.359
DRR006522	Root Winter glycyrrhizin high producing strain	2.493
DRR006523	Root Summer glycyrrhizin low producing strain	5.739
DRR006524	Root Summer glycyrrhizin low producing strain	5.616
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.487
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.444

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.867
SRR2868004	Drought Stress (root)	12.702
SRR2967015	Control (root)	12.421

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.165
SRR9715740	Leaf	0.119
SRR9715741	Leaf	1.098
SRR9715739	Root	3.177
SRR9715742	Root	5.884
SRR9715743	Root	4.921

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	92.512
SRR8749028	MeJA induced 9h	83.164
SRR8749029	MeJA induced 9h	64.729
SRR8749030	Uninduced	9.653
SRR8749031	Uninduced	23.518
SRR8749032	Uninduced	31.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.850
SRR8400027	Control - Root	18.076