Gene detail

Gene detail information of Glyur000017s00002384

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75820.1	0	Leucine-rich receptor-like protein kinase family protein
NR	CAD42335.1	0	hypernodulation aberrant root formation protein [Lotus japonicus]
COG	YP_004775215.1	1.00E-49	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9SYQ8\|CLV1_ARATH	0	Receptor protein kinase CLAVATA1 (Precursor)
trEMBL	tr\|Q8GRU6\|Q8GRU6_LOTJA	0	LRR receptor-like kinase {ECO:0000313\|EMBL:BAC41327.1}

Sequence

Transcript Sequence

>Glyur000017s00002384.1
ATGAAAAGCGTGGCGTGTTGTTATATGGTGGTGGTATGGTGTGTTGTTATGTTGATTTGGTTCCGCGAGACAGCGTGTTCTAATTCATTCACTGACATGGACGCGTTGCTGAAGCTGAAGGAGTCTATGAAGGGAGAGAAAGCCAAAGGCGATGCACTTGAGGACTGGAAATTCTCCACGTCGCTTTCCGCACACTGTTCGTTTTCCGGGGTAACATGCGACCAAGACCTGCGCGTGGTTGCTCTGAACGTCACGCTCGTTCCCCTGTTCGGCNACGTTCCGAAGGAGATCGGAATGTTGGAGAAGCTTGAGAATCTCACCCTCACCATGGACAACCTCACCGGAAACCTCCCTTTGGAGCTCGCAAACCTCACTTCTCTTAAAATCCTCAACATCTCCCACAACTTCTTCTTCGGCCCCTTCCCCGGCAACATCACTCTCGGCATGGCCAAACTTGAGGTACTCGACGCCTATGATAACAACCTCAACGGTTCCCTCCCCGAGGAAATCGTAAGACTCGACCAGCTCAGATACCTCAGTNTTGCCGGGAACTTCTTCTCCGGTACGATACCGGAGAGTTACTCGGATTTCCNGAGCCTGGAGGTCTTGAACCTGAACGCGAACAGCTTAACGGGGAAGATTTCGAGGAGCCTGGNTAAGCTGAAGACGCTGAAGGAGATNCGTCTCGGGTACAACAATGTTTATGAAGGCGGAATCCCGCCGGAGCTTGGTTCCATGAAATCCCTAAAACTGATTGACTTCGCTTTTTGCAACCTCAGCGGCGAGATTCCACCGAGCCTAAGCAACCTGAAGAACCTGCACACNTTGTTCTTGCAGGTGAACAACCTCACGGGAACCATCCCGCCGGAGCTATCTTCCATGACGAGCCTCATGTCGCTGGACCTCTCCATCAACAACCTCACGGGTGAGATTCCTGAGAGCTTCTCCATGCTCGGGAACCTCACTCTGATGAACTTCTTCCAGAACAAGCTCCGAGGCTCAATCCCTTCCTTCATCGGCGACCTTCCGAACCTGGAGGCTGTTCAGGTTTGGGAAAACAACTTCTCCTTCGTGCTTCCACAGAACTTGGGCCGAAACGGTAAGCTCAAGTTCTTCGACGTCACAAAGAACCACCTCACCGGGTTGATTCCTCCGGATTTGTGTAAATCGAAGAGNCTTCAAACGTTCATCGTAACTGACAACTTCTTCCACGGCCCAATCCCAAAGGGGATCGGCGAGTGCAAGTCACTCGTCAAGATACGCGTCGCCAATAACTACCTAGACGGCCCAGTCCCCGCTGGGGTTTTCCAACTACCTTCCGTTATCATAATGGAGCTTGCAAATAACCGTTTTAACGGCCAACTTCCTTCAGTGATTTCAGGCGATTCTCTGGGGCTTCTCACGCTTTCCAACAACCTGTTCACGGGGAGAATCCCGCCCGCNCTGAGAAACCTCAGGGNGCTTCAGACCATGTCGCTCGACGGCAACCAGTTCGTCGGTGATATCCCCGAGGAGGTTTTCGAGTTGCCAGCACTGACGAAGATCAACATGAGTGGCAACAACCTCACCGGTACAATCCCAACAACGATGGCTCAGTGTGCTTCACTGACGGCCGTTGACNTTAGCCGGAACATGCTTGTTGGCGAGGTTCCCAAAGGGATGAAGAATCTAAAGGACTTGAGCATTCTGAATCTCTCCCGCAACGCCATATCGGGGCCTATCCCCGATGAGATTCGATTCATGACGAGCCTCACCACACTGGACCTCTCATACAACAACTTCNCCGGAAGCGTCCCCACCGGGGGTCAGTTTTTAGTCTTCAACGANAGGTCGTTTGCCGGAAACCCAAGCCTCTGTTTCCCACACCAGTCCTCTTGCCCGTCCTCGCTCTACCTGGCCAGGAAAGGTGCCAAAACGACGAAAGTGAGGGTGAGAGCCATTGTCGTTGGGATTGCACTCGCCACCGCAGTGCTTCTAGTGCTGGTGACGGTTCACCTAACGAGGAAGAGAAAGCTCCATAGGGAAAAGGCNTGGAAGCTGACGGCGTTCCAGAGGCTGGACTTCAAAGCAGAAGACGTAGTGGAGTGCCTTAAGGAGGAGAACATAATAGGGAAAGGAGGAGCAGGGATCGTGTACAGAGGGTCCATGCCAAACGNAACTGACGTGGCGATAAAGCGTTTGGTTGGACAAGGAAGTGGGCGAAACGATTATGGTTTCAAAGCGGAGATTGAGACGCTGGGGAAGATNAGGCACAGGAACATCATGAGGTTGTTGGGGCATGTTTCGAACAAGGACAGTAACTTGTTGCTGTATGAGTACATGCCAAATGGGAGCTTGGGGGAGTGGCTGCATGGGGCTAAAGGTGGNCACCTGAGGTGGGAGATGAGGTATAAGATTGCGGTGGAGGCTGCTAAGGGACTCTCCTATTTGCACCATGATTGTTCCCCTCTCATCATTCACAGGGATGTCAAGTCCAATAATATATTGCTCGATGCTGATTTTGAGGCCCATGTCGCTGATTTTGGACTCGCCAAGTTCTTGTACGACCCTGGAGCCTCTCAATCCATAGTATGCTTACACGCTGAAAGTGGACGAGAAAAGCGACGTGTACAGCTTTGGGGTGGTGCTGTTGGAGCTGATAGTAGGAAGGAAGCCAGTGGGTGAGTTCGGGGATGGGGTTGACATCGTTGGATGGGTCAATAAAACCAGATTAGAGCTTTCTCAGCCGTCCGATACAGCATTAGTGTTGGCGGTGGTGGACCCGCGACTCACTGGGTACCCCTTGACCAGTGTCGTCCACATGTTCAACATAGCTATGACGTGTGTCAAGGAAATGGGGCCCGCTAGGCCCACCATGAGGGAAGTTGTTCATATGCTCACCAATCCACCTCAGACTACTACCACCACTCACAACCTAATTAATCTCTAGATAAACCTAATTAAGCGTCGTGCTGATCACGGGTTCACTTCCTTGAAAATAAATTAACATAGAAGAAAATGTGCAAAAATAACTTCCATTTGTACTAGCTAGCTATATAGCTTGTGTGAAGAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	106006	109610	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002384.1	PF08263.7	LRRNT_2	32	74	4.80E-10
Glyur000017s00002384.1	PF00560.28	LRR_1	296	316	0.36
Glyur000017s00002384.1	PF13855.1	LRR_8	487	546	4.30E-07
Glyur000017s00002384.1	PF13516.1	LRR_6	582	594	0.43
Glyur000017s00002384.1	PF00069.20	Pkinase	699	855	5.70E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.555
SRR1783600	control	9.689
SRR1783602	moderate drought stress	9.239
SRR1811619	moderate drought stress	9.352

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.784
DRR006520	Root Summer glycyrrhizin high producing strain	22.645
DRR006521	Root Winter glycyrrhizin high producing strain	1.715
DRR006522	Root Winter glycyrrhizin high producing strain	1.630
DRR006523	Root Summer glycyrrhizin low producing strain	37.701
DRR006524	Root Summer glycyrrhizin low producing strain	37.445
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.371
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.197

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.432
SRR2868004	Drought Stress (root)	111.222
SRR2967015	Control (root)	79.161

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.865
SRR9715740	Leaf	26.684
SRR9715741	Leaf	31.655
SRR9715739	Root	13.377
SRR9715742	Root	37.967
SRR9715743	Root	30.961

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.725
SRR8749028	MeJA induced 9h	2.843
SRR8749029	MeJA induced 9h	2.926
SRR8749030	Uninduced	0.350
SRR8749031	Uninduced	0.224
SRR8749032	Uninduced	2.676

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.978
SRR8400027	Control - Root	16.418