Gene detail information of Glyur000017s00002383 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05060.1 | 0 | NOP56-like pre RNA processing ribonucleoprotein |
| NR | XP_003537858.1 | 0 | PREDICTED: probable nucleolar protein 5-2-like [Glycine max] |
| COG | YP_001191801.1 | 4.00E-56 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit [Metallosphaera sedula DSM 5348] |
| Swissprot | tr|Q9MAB3|NOP5B_ARATH | 0 | Probable nucleolar protein 5-2 |
| trEMBL | tr|I1LJA4|I1LJA4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G12200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 99305 | 102829 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002383.1 | PF08156.8 | NOP5NT | 1 | 66 | 1.00E-21 |
| Glyur000017s00002383.1 | PF08060.8 | NOSIC | 159 | 211 | 1.10E-28 |
| Glyur000017s00002383.1 | PF01798.13 | Nop | 251 | 398 | 1.00E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 78.626 |
| SRR1783600 | control | 80.687 |
| SRR1783602 | moderate drought stress | 96.960 |
| SRR1811619 | moderate drought stress | 99.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 224.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 220.588 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 98.085 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 93.023 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 256.671 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 257.109 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.717 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 164.299 |
| SRR2868004 | Drought Stress (root) | 116.913 |
| SRR2967015 | Control (root) | 126.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 44.324 |
| SRR9715740 | Leaf | 56.742 |
| SRR9715741 | Leaf | 47.612 |
| SRR9715739 | Root | 13.103 |
| SRR9715742 | Root | 108.607 |
| SRR9715743 | Root | 91.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 771.745 |
| SRR8749028 | MeJA induced 9h | 173.589 |
| SRR8749029 | MeJA induced 9h | 553.122 |
| SRR8749030 | Uninduced | 68.078 |
| SRR8749031 | Uninduced | 58.690 |
| SRR8749032 | Uninduced | 124.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 117.090 |
| SRR8400027 | Control - Root | 95.359 |