Gene detail information of Glyur000017s00002381 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20780.1 | 5.00E-34 | senescence-associated E3 ubiquitin ligase 1 |
| NR | KHN25402.1 | 0 | U-box domain-containing protein 44 [Glycine soja] |
| Swissprot | tr|Q9LM76|PUB44_ARATH | 1.00E-44 | U-box domain-containing protein 44 |
| trEMBL | tr|K7LSX8|K7LSX8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G04420.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 90692 | 92926 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002381.1 | PF00514.18 | Arm | 483 | 515 | 0.00013 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.159 |
| SRR1783600 | control | 0.160 |
| SRR1783602 | moderate drought stress | 0.382 |
| SRR1811619 | moderate drought stress | 0.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.295 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.293 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.242 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.232 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.301 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.298 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.689 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.451 |
| SRR2868004 | Drought Stress (root) | 7.611 |
| SRR2967015 | Control (root) | 6.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.028 |
| SRR9715740 | Leaf | 5.786 |
| SRR9715741 | Leaf | 5.262 |
| SRR9715739 | Root | 0.101 |
| SRR9715742 | Root | 0.081 |
| SRR9715743 | Root | 0.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.156 |
| SRR8749028 | MeJA induced 9h | 3.084 |
| SRR8749029 | MeJA induced 9h | 1.909 |
| SRR8749030 | Uninduced | 4.789 |
| SRR8749031 | Uninduced | 21.256 |
| SRR8749032 | Uninduced | 9.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.874 |
| SRR8400027 | Control - Root | 2.294 |