Gene detail

Gene detail information of Glyur000017s00002368

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50930.1	3.00E-130	cytochrome BC1 synthesis
NR	XP_003541011.1	0	PREDICTED: probable mitochondrial chaperone BCS1-B-like [Glycine max]
COG	YP_007098995.1	3.00E-30	AAA+ family ATPase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q0DHL4\|FTSH8_ORYSJ	7.00E-09	ATP-dependent zinc metalloprotease FTSH 8, mitochondrial (Precursor)
trEMBL	tr\|I1LQ12\|I1LQ12_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G04490.1}

Sequence

Transcript Sequence

>Glyur000017s00002368.1
ATGGCGGTTGAATTTCAACTCCCTTCCACCAAAACGGTGATATCCACCGCCGCCTCGGCAGCCGCCACCGCAATGCTCCTCCGTACCCTCGCACGTGACTACCTCCCACGTGAGCTCCGCCACTACCTCCACTCCAAGCTCACCAAAACCCTCACCTCACTCTTNTTCTCTTCCCAACTAACCCTCATCATCGANGAGTTCGAAGCCCTCTCCCACAACGAACTCTTCAACGCCGCAGAACTCTACCTCAAACCCCACACCTCCCCCAACACGAAGAGGTTCAAAGCCACAATGCCACCAAAAGAGAACAAAATCTCCGTCACCATGGAGCGCAACGAAGAAATACTCGACACCTTCAACGGCGTCGTATTCCGTTGGAAACTGATATCCAAACAGATCAAATCGAGGTACATTCAAACCCCGGGTTCTTCAAACGAGTACCACTCACCCAAATCCGAGACACGCCACTTCGAACTGCGGTTCCATAAGAAGCACAGGGACATGGCCGTAGCCGAATATTTGCCCCACGTGATGGAGAAGGCGAAGGAGGTTAACGAGGAGAGGAAGACGCTGAAGCTNTTCACGCTGAGGAGTGAACGATTGGGTGGTAGGAATCGAGAGAAGATGTGGCATTCGGTGAGTCTCGATCACCCTGCAACGTTTGACACGTTGGCGATGGATTGGGAATTGAAGAGGATGGTGATGGAGGATTTGGATAGGTTTTTGGGGAGGAAGGGTTTGTATAGGAGTGTTGGGAAGGCTTGGAAAAGAGGGTACTTGCTTTCTGGGCCTCCTGGGACTGGAAAATCTAGCTTGGTTGCTGCTATGGCTAATTATCTTAATTTCGATGTGTATGATTTGGAACTCACTGATCTTAGGCGTAACTCTGACCTTAGGAAGTTGTTGATTTCCACTGGGAATCGATCCATACTTCTTGTTGAGGATATTGATTGTTCCCTTCAGCTCCACAATCGCCTTCTCAAACCGCCAAAACCTTTGGTTGTTCCACTTCCAACAACCCCTTGGTTTTTTGACAATAAACAGCCCCAGGTGACTTTATCGGGATTCCTCAATTTCATAGATGGGTTGTGGTCTAGCTGTGGAGATGAGCGGATCATAGTGTTCACGACCAATCACAAGGACAAATTGGACCCTGCTCTGTTGCGCCCGGGGCGCATGGATGTGCACATTGCCATGTCTTACTGCACCCCATGTGCGTTCAAAATGATGGCCTCCAATTACCTTGGGATCACAGAGCACCCACTTTTTGTTGAGGTTGACAAGTTGCTCCAGACGACGAATGTCACTCCTGCAGAGGTGGGTGAGCATTTTTTGAAGAATGAGGACCCTGAGATCGCATTAAGAAGCCTCATAGAGCTCCTTGTAGAGAAGGGACGAAATCATGAATCTAAAGCTATCAAAGCAGATCTCACCACGACACCACTCAATGATTTGAATCCTGAAATAGTTCTGGAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	15331	17530	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002368.1	PF14363.1	AAA_assoc	34	131	1.80E-21
Glyur000017s00002368.1	PF00004.24	AAA	260	400	5.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.970
SRR1783600	control	5.944
SRR1783602	moderate drought stress	3.295
SRR1811619	moderate drought stress	3.250

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.117
DRR006520	Root Summer glycyrrhizin high producing strain	2.235
DRR006521	Root Winter glycyrrhizin high producing strain	0.528
DRR006522	Root Winter glycyrrhizin high producing strain	0.353
DRR006523	Root Summer glycyrrhizin low producing strain	3.881
DRR006524	Root Summer glycyrrhizin low producing strain	4.080
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.271
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.296

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.366
SRR2868004	Drought Stress (root)	2.515
SRR2967015	Control (root)	2.472

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.814
SRR9715740	Leaf	1.665
SRR9715741	Leaf	1.770
SRR9715739	Root	1.300
SRR9715742	Root	3.063
SRR9715743	Root	2.431

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.012
SRR8749028	MeJA induced 9h	0.767
SRR8749029	MeJA induced 9h	0.361
SRR8749030	Uninduced	0.021
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.158

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.942
SRR8400027	Control - Root	4.807