Gene detail

Gene detail information of Glyur000016s00003097.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G03090.2	methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)
NR	XP_004495179.1	PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X2 [Cicer arietinum]
COG	YP_003146243.1	carbamoyl-phosphate synthase L chain ATP-binding [Kangiella koreensis DSM 16069]
Swissprot	tr\|Q42777\|MCCA_SOYBN	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial (Precursor)
trEMBL	tr\|G7IDL5\|G7IDL5_MEDTR	Acetyl-CoA carboxylase, putative {ECO:0000313\|EMBL:AES60851.1}

Sequence

Transcript Sequence

>Glyur000016s00003097.1
ATGGCTTATTCCATGTTGTTCCGCAGAGAGGTTAGCAGGAGCAGGGTGGNGTTGCAGTGGCGCGTGTGGGCGCGAGCTTTCTCAGAGGAAGGGAAGAAGAGAGAGCGCATAGAGAAGATTCTGATAGCGAACAGAGGGGAAATAGCNTGCAGGATCGCGAGGACCGCGAGGAGGCTGGGGATTCGAACCGTNGCGGTTTACAGCGACGCCGACAAGGACTCCCTCCACGCCATCCACCCNGGATATGGGTTCATGTCCGAAAGTGCTGACTTTGCCCAGCTCTGTGAGGACAAGGGTCTTACCTTCATTGGTCCTCCTGCATCTGCCATCCGAGATATGGGTGACAAGAGTGCATCGAAGAGAATAATGGGGGCTGCTGGGGTGCCGCTTGTGCCTGGATATCATGGGGATGAACAAGACATTGATAAAATGAAGTTGGAGGCTGATCAGATTGGGTATCCAATCCTCATCAAGCCCACCCATGGAGGTGGAGGAAAGGGTATGAGGATTGTGCACACTCCAGATGAATTTGCCGAATCGTTCCTGGCAGCACAACGTGAGGCAGCTGCTTCTTTTGGTGTCAACACAATTTTGCTGGAGAAGTATATTACACGGCCAAGGCACATAGAAGTCCAGATATTTGGGGATAAGCATGGGAATGTTCTGCATTTGTATGAGAGAGATTGCAGTGTGCAGAGAAGACACCAAAAAATAATTGAAGAAGCTCCAGCTCCAAACATTTCTACTGAGTTTCGTGCGCACTTGGGTCAAGCTGCTGTTTCTGCAGCAAAGGCAGTTAACTATTACAATGCTGGGACTGTGGAGTTTATAGTTGATACGGTCTCAGGCCAGTTTTACTTTATGGAGATGAATACCCGTCTTCAGGTTGAGCATCCTGTCACAGAGATGATTGTCGGTCAAGATCTTGTTGAATGGCAAATCCGGGTAGCCAATGGAGAGGCTCTTCCATTGAGTCAGTCACAAATACCCTTAGCAGGTCATGCTTTTGAAGCTCGAATTTATGCTGAAAATGTTCCAAAAGGATTTCTTCCAGCAACTGGAGTTTTACACCATTATCATGTTCCAGTCTCATCCGGAGTCCGGGTGGAGACTGGAGTTAAAGAAGGAGATGCTGTTAGCATGCACTATGATCCAATGATTGCTAAGCTTGTGGTATGGGGAGAAAATCGTGCTGCAGCCTTGGTCAAACTGAAGGATAATTTGTCAAAGTTTCAGGTGGCAGGTCTACCAACCAATGTCAACTTTCTTCAAAAGCTTGCTAATCACTGGGCATTTGAAAATGGCAATGTGGAGACTCATTTTATTGATAATTACAAAGAAGACCTCTTTGTTGATGCTAACAATTCAATGTCTGCCAAAGCATATGAAGCTGCTAGACTTGGTGCATCCTTTGTGGCTGCATGTCTCATTGAGAAAGAGCATCTCGTATTGTCAAGAAACCCCCCTGGTGGCAGCAGCTTACACCCTATATGGTATGCTTCACCACCTTTTAGAGTCCATCATCAAGCTAAGCGTAAAATGGAACTTGAGTGGGATAATGAGTATGATAGTGGTAGCTCAAAGATCTTGAAGCTTACTATCACTTATCAGCCTGGTGGAAGATACCTNATTGAGGCAGAAGAAAATGGAAGTCCTGTTTTAGAAGTTAAAGCAACATATGTAAAAGATCACTATTTCAGAGTTGAAGCTGATGGTGTAATCAACAATGTTAATCTTGCTGTTTACTCGAAGGAGCAAACAAGGTATATTCATATATGGCAAGGGTCCTATCATCATTGTTTCAGAGAGAAACTAGGCCTCGAGTTGTCTGAGGATGAAGAATCCCAACNTAAACCCAAATTTGAATCATCAGCCAAGCCTCAAGGAGCTGTTGTGGCGCCCATGGCAGGCTTGGTGGTTAAGGTTCTAGTGAAGAATGAGACAAGAGTAGAGGAGGGACATCCTGTGTTAGTATTAGAAGCAATGAAGATGGAGCATGTTGTAAAGGCACCATCTTCTGGCTATGTTCGTGGGCTTCAAGTTACAGTGGGTGAACAGGTTTCTGATGGTAGTGTTCTGTTCAATGTAAAGGATCAATAAAACCATGCGTGGAGTACAGCTTTACACCAAGAGTTTGGCAACGGGTACCTCATTCTCATTCTGAATATAGATGGTTAAAAGTGAATCAATCATGTGAGCATCTACACCTGCAAATTGATTACCTGTTGAACAATCTTTGTAACTCAAATCCTTAAGTTTCAAAGGATGAAATGTACTTTACAATAATGCAAGTAGTCCCTCCAGTCATTAATAACAAAGCTAAAAATTGCTTCGATTTAGATATTCTTCCATCGGGCGTCTTCACCTGCTCCTTAAATAGATCTCTATTTTTTTTTTCTTTTCTTTTCTATGATGGCTTTCCTTCTAAGGNGAGATGAACACACTTAAAAATTATGTAATAGTCGGAAACATATGCCAACTACAAATCCAAGATGCGGGATTAAATTCTGTGTTGGGGAACAGGGGCACTAACAATTAGAGAAAAATTTGTATAAAAAAAACAATTACAGAAAAAGGAATTTTATGGATTTGTTGCATGGTATACGTGATTCACCCTCAAATTGAAGAGCCAAAGATTGCACATTGTGAATGTAAAGTAATGCCACCCGTATTAATCAGGCCCTCGGATTCTGTCTGGTTATTTTTTTCAGCATTTTTTTGGGGTCAAATTCCAGCTTTGAAGTCGTTATTTCTTTACCGTTTGTTGGAGTTTCAAAGGGAAGCAGGCACTTCAAAATATGTGATAGCTACTTGTTAATCTCATCCTCACGTGACTAGTTTTTTTTTATAATTTGGGGTAGGTACTCTGGTTATGGTGCTGTATTTGGTAGAAAAGATTTAGACAAGCATAAAAATGCAGTTTTTTTTCCTCATTTAAATTGTTATAAACTGAGGTAGGTCCTTTTCTGAATTTCATGCTACAAACATTCAGTGGGCGCCCTCAAACTTTGGTCGGAACTCTCTTCACGTTTCACAATGCCTCATCGCAAGTCACAACAACGTTAACTTCAACATTGTAAGCTTGTTTTGATATCTGGTGACGACTGCACCTCTTTGTTTTGGTTTTTTATGAATGCTTTGAGTAATGAGTTCTTCAACAAAATTAATCAGATGTAGAGAGATAAATCCTCATTCCTGAAATTAAACATACAAAAGATGCCCACCACGCTCAGATATATGTTTTGCATATTACCATTAGTATTACTTCCTAGTAGTAGTATAATTAAAGACCATTATCTATTAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	603998	611754	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01968	E6.4.1.4A	EC:6.4.1.4	Valine, leucine and isoleucine degradation	map00280

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004075 biotin carboxylase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003097.1	PF00289.17	CPSase_L_chain	37	76	5.60E-13
Glyur000016s00003097.1	PF00289.17	CPSase_L_chain	76	110	8.70E-10
Glyur000016s00003097.1	PF02786.12	CPSase_L_D2	115	323	4.20E-76
Glyur000016s00003097.1	PF02785.14	Biotin_carb_C	337	443	8.50E-36
Glyur000016s00003097.1	PF00364.17	Biotin_lipoyl	631	695	5.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.422
SRR1783600	control	5.546
SRR1783602	moderate drought stress	8.558
SRR1811619	moderate drought stress	8.838

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.299
DRR006520	Root Summer glycyrrhizin high producing strain	5.281
DRR006521	Root Winter glycyrrhizin high producing strain	13.460
DRR006522	Root Winter glycyrrhizin high producing strain	13.079
DRR006523	Root Summer glycyrrhizin low producing strain	3.534
DRR006524	Root Summer glycyrrhizin low producing strain	3.641
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.830
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.770

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.259
SRR2868004	Drought Stress (root)	13.376
SRR2967015	Control (root)	16.286

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.743
SRR9715740	Leaf	13.982
SRR9715741	Leaf	14.768
SRR9715739	Root	3.423
SRR9715742	Root	6.947
SRR9715743	Root	6.432

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.101
SRR8749028	MeJA induced 9h	13.126
SRR8749029	MeJA induced 9h	8.243
SRR8749030	Uninduced	14.814
SRR8749031	Uninduced	43.954
SRR8749032	Uninduced	26.216

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.881
SRR8400027	Control - Root	8.525