Gene detail

Gene detail information of Glyur000016s00003092.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04810.2	7.00E-112	NIMA-related kinase 2
NR	XP_003536912.1	9.59E-147	PREDICTED: serine/threonine-protein kinase Nek2-like isoform X1 [Glycine max]
COG	YP_006527485.1	4.00E-29	serine/threonine protein kinase with PASTA sensor(s) [Melioribacter roseus P3M-2]
Swissprot	tr\|Q2QMH1\|NEK2_ORYSJ	1.00E-136	Serine/threonine-protein kinase Nek2
trEMBL	tr\|I1L868\|I1L868_SOYBN	4.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G03470.1}

Sequence

Transcript Sequence

>Glyur000016s00003092.1
ATGGATTCAAATAGGAACGGGAACAGGAATGAAGAGCGAGTGACGCATGGAAATAGGGAGCAGGTTGAAATGGAGCAGTATGAAGTTCTAGAACAGATAGGCAAGGGCTCCTTTGCTTCTGCTCTGCTTGTGAGGCACAGACATGAAAACAAAAAGTATGTCGTGAAGAAGATCCGCCTTGCCCGCCAAACCGACAGAACCCGTAGATCTGCTCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATTGTAGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCTAACGGTGTTCATTTTCCTGAAGAGAAGCTTTGCAAGTGGCTTGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTAACTTGTGATGATCTTGCTTCCTCGATTGTGGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGATCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAGACCAGCCTTTAAAGCTCTTTCGAGGCCTTGTGAAGAGTATGCTGCGGAAAAATCCTGAGCTTAGGCCAAGTGCTGCAGAGTTGCTAAATCATCCACATCTTCAACCTTATATACTTAAAATTCACCTAAAACTAAATAACCCCAGAAGAAGTACTTTTCCATTCCAATGGCCTGACCCAAACTATGCAAGGAGATCTCGATNTGTAGTANCAGAATCTGNTTCCACTCTTTCTGNCAGAGGTAAACGATTGTCATTCAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTATGTGTTCTACTCAAAGACAAGGATATTCTACTTGTTCAAAAGAGAAACACTATGAACTATCTGTTGGCTGTGCCCGTGGAGAATGCAATTCTAACAAATCAAAAGACACAAAGTTCTCAATTGTTGATCGGATTCCAAGATTGAGAGCAGCAAAGGAGTTTGCCACCCCTCGGCGACATACAATACCATCAAAGATACCCCATACTAGTTCCAAGCGTGATTCACTTCCAGCATCTTCTACTCCAGCTGGTAAGTTTACCCCACCGACTCGCAGAGCTTCCCTTCCGCTTCCTACAAGATCCACGGCCACGAGCACCCCTTACAGAGCCAATGTTGGTCTTCTTCAAAGTGTGGACTCTCATGATATTTCTGTTAATGCACCACGAATTGACAAGATTGCTGAATTCTCTCTGGTCTCTGGTGAGGATCATCCTCTCTTCCCCGTGCGTGGAACTTCATCAACATCAGCTCAGTGCTCTTCTGGTTCCCCAAGGAGTGCTGACTGCTCAATCACAAAGGACAAGTGTACAATCCAGGTTGTGGACAAAGCCAGTGTCCCTACCAGTGGTCCTCCAGTTTCATATGGCAACGAATGCTCTGAACAAGTGGCAACTGCTGTTTCAAGCCATTCCTCTGCTGAGTCTCGNCAGCGCAGGTTTGACACCTCGTCTTACCAGCAACGTGCGGAGGCATTGGAGGGGTTGCTCGAGTTCAGTGCACGGCTCCTACAACAACAGAGGTTTGAAGAGCTTGGGGTGTTATTGAGGCCATTCGGGCCTGAGAAGGCTTCTCCAAGGGAAACAGCCATTTGGTTGGCTAAGAGCTTTAAAGAAACTTTGGTCTAAGGTTTTCTGATGCACTTTTGTATCATTAACAATAGTGTGTAAATTAATGTAGTACTATAATTTGAAGAGTAGCTTAGCTTCTAATCTTATTGTTCTTGATAACCCCATTGACATTTTGTACGGCACTTGCACGAACGGTGTGAACAAAGTTAAATGACGCTCACCAAGTGATGAAATATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	552303	565996	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0009966 regulation of signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003092.1	PF00069.20	Pkinase	27	230	3.50E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.644
SRR1783600	control	1.841
SRR1783602	moderate drought stress	2.406
SRR1811619	moderate drought stress	2.318

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.698
DRR006520	Root Summer glycyrrhizin high producing strain	1.813
DRR006521	Root Winter glycyrrhizin high producing strain	3.682
DRR006522	Root Winter glycyrrhizin high producing strain	3.553
DRR006523	Root Summer glycyrrhizin low producing strain	2.810
DRR006524	Root Summer glycyrrhizin low producing strain	2.861
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.087
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.641

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.211
SRR2868004	Drought Stress (root)	6.274
SRR2967015	Control (root)	7.212

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.526
SRR9715740	Leaf	7.066
SRR9715741	Leaf	5.619
SRR9715739	Root	1.204
SRR9715742	Root	2.451
SRR9715743	Root	2.108

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.473
SRR8749028	MeJA induced 9h	18.240
SRR8749029	MeJA induced 9h	15.319
SRR8749030	Uninduced	10.013
SRR8749031	Uninduced	5.588
SRR8749032	Uninduced	4.528

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.082
SRR8400027	Control - Root	6.375