Gene detail

Gene detail information of Glyur000016s00003086

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03070.2	1.00E-91	Bax inhibitor-1 family protein
NR	XP_007144660.1	1.34E-156	hypothetical protein PHAVU_007G174500g [Phaseolus vulgaris]
COG	YP_008088116.1	7.00E-16	Integral membrane protein, interacts with FtsH [Chthonomonas calidirosea T49]
Swissprot	tr\|Q94A20\|BI1L_ARATH	2.00E-79	BI1-like protein
trEMBL	tr\|V7BFM2\|V7BFM2_PHAVU	5.00E-157	Uncharacterized protein {ECO:0000313\|EMBL:ESW16654.1}

Sequence

Transcript Sequence

>Glyur000016s00003086.1
GTAACTCCCGCAAAATCCATACTCCACGCAAGCATAGAAGATCGAAAACACCGAAGTATTTTCTCTCACACTTTCCTTTCGATTCCTTCACTTTCTCAGTCGAGAAAACTTCACCGGAAAAAGAAAGGGGCTCGAGATCAAGTTGTGAAGATGTGGAATCAACCATTCGAGAAAACGGATGTGGAGAGAGGGGCGAGGCCTCTGTACCCGATGATGCTCGAGAGCCCCGAACTGCGGTGGTCCTTCATCCGAAAAGTCTACGCCATCATCGCCATCCAGTTGCTCGCCACCGTCGCCGTCGGCGCCGTCGTCGTCACCGTTCGCCCCATCTCCACCTTCTTCGCCACCACCGGCGCCGGCTTCGCTCTCTACATCGTCCTTATCTTCGTCCCTTTTATTACGTTGTGCCCTCTTTACTACTATTACCAGAAGCATCCAATCAATTACCTCCTCCTAGGGGTTTTCACTATTTCTCTTGCCTTTGTCGTTGGAATGAGTTGCGCCTTCACTAGCGACTGGAGATTGGATACAGAGAAAGTTATTCTGGAAGCTGTCATATTGACCGCTGTGGTGGTGATCGCTCTGACTCTCTACACATTTTGGGCCGCAAGGAGGGGTCAGGATTTCAACTTCCTTGGCCCCTTCTTGTTTGGTGCCGTGCTAGTTCTCATGGTCTTTGCGTTTATTCAGGTTCTGTTTCCACTGGGTAAGTTGTCTGTGATGATCTACGGGTGCTTGGCAGCAATTATATTTTGTGGCTACATTGTATATGACACAGACAACCTGATCAAGAGATACTCCTACGATGAATACATTTGGGCTTCTGTCTCCTTGTATCTGGATGTCATCAACCTTTTCCTGTCTTTGCTCACTATTTTTAGAGCCGTCGAAAATTGAGATCGTTGTATCCCTTGGTACATATTTCTGTGGGAACGTTTGGGTTTTGAAAAACAAATTCCTTGTCGGTTAATAAATCTTTGTGGCTTGGCCCTGTTGCTAGGTGTTTCGTACACGATGGATTGTTGTCAGAACTGTTGATATACAAAGCTGATTAATGATGGAATTTTGAACTGAATTGTAAATACGTTCACGATTGTAGCTTGTAGCTGATTCTTGTGTTCTTTAGTATGTTGTTTTTAGTCAGTTGCCACTTGCCTAGATATATTGATTGGTACAGCTACGTGTAAGTTCGTTACTCTCTCCTATGTGAGAAACCAATAAGATAGCTGATAGCTTGAGGTTGCTCCTCTTTGTCCAAAATTGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	526318	528437	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003086.1	PF01027.15	Bax1-I	31	243	1.90E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.568
SRR1783600	control	25.925
SRR1783602	moderate drought stress	19.930
SRR1811619	moderate drought stress	19.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.224
DRR006520	Root Summer glycyrrhizin high producing strain	47.765
DRR006521	Root Winter glycyrrhizin high producing strain	15.957
DRR006522	Root Winter glycyrrhizin high producing strain	15.709
DRR006523	Root Summer glycyrrhizin low producing strain	59.054
DRR006524	Root Summer glycyrrhizin low producing strain	58.825
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.812
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.783

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	84.174
SRR2868004	Drought Stress (root)	82.797
SRR2967015	Control (root)	83.760

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.705
SRR9715740	Leaf	33.447
SRR9715741	Leaf	37.353
SRR9715739	Root	40.253
SRR9715742	Root	44.115
SRR9715743	Root	42.513

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.288
SRR8749028	MeJA induced 9h	36.712
SRR8749029	MeJA induced 9h	25.374
SRR8749030	Uninduced	15.701
SRR8749031	Uninduced	13.379
SRR8749032	Uninduced	14.732

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.452
SRR8400027	Control - Root	97.730