Gene detail

Gene detail information of Glyur000016s00003080.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50700.1	1.00E-64	indeterminate(ID)-domain 2
NR	XP_003590574.1	0	Zinc finger protein-like protein [Medicago truncatula]
Swissprot	tr\|O22759\|IDD12_ARATH	3.00E-95	Protein indeterminate-domain 12 {ECO:0000303\|PubMed:16784536}
trEMBL	tr\|V7BGM2\|V7BGM2_PHAVU	9.00E-178	Uncharacterized protein {ECO:0000313\|EMBL:ESW16660.1}

Sequence

Transcript Sequence

>Glyur000016s00003080.1
CCAGGAACCAAAGTAATAAATACATAGCTATTGGATTTGAAACAAACAAAACAAGAGACACATTAGAATATCGTATCTTTGCTTTTTCTTCTCTCTTCTTTTTCTTCCTCCAATTTGGAGTTTTTCTTCAAAGGCAACATGTTCCCCGCAGTTATGTCCAATTCCACTTCTTTGTCCGAAGAAGCTGCCAGTGTCTCTTCTGGTAGATTAAATCACATAGTCTCAACCATTTCCCCTCAGCAGCAGCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATAGCGTTATCCCCGAAGACCCTTTTAGCAACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTTCACAGGAGAGGCCACAACCTCCCATGGAAGCTGAANCAAAGNAACAGCAAAGAGGTTAAGAAGAGAGCATACGTTTGTCCAGAGCCTTCATGCGTTCACCACAACCCTTCAAGGGCTCTTGGGGATCTTACAGGGATTAAGAAGCACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCAGTTCAGAAGGACAGCTTCATAACCCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGTCATCAGCAAACCAGTTAACCACCACAAACACAAACCCACTACTCCACTCACTCTTCCTTTTCCCACCCCAACAACAACATAACAACTTCCAAAACCATATCACCACCAATCCCTGCTGGGACCCATCTCAAGAAAACCCTAACCCTACCACCAACCTTGCTTCCCTCCACAACAACATCAAGCCTGAAGTTCAAAACTTTCACACCCCCAACAACCACCTCTCTTCTCCATTGCCACCTCCCCCATTATTTCTTCAGCACCCCAAAAGCGTGAGCATGATAACCGCCTCAGTACCCTTCCACGTGCGCACCACCCAACTACCCGCCACGTCAGCACACCTCTCCGCCACTGCTCTGCTCCAGAAGGCGGCAACCGTCGGCGCCGCTGCCATCACTGGCGCCGCCGCCGCCCAACACGCTCACCATCACGTGACTCATCATCAGCTCGGCGCGGGCGGCGAGTTTGGATCGGTGACTCAGCTCGACTCGGTGGTGGTGCCCGATCATCACTGCATTAACAACATGAGAGGCCTCACCACGGCCGCAACCCGGAACCTCACGAGGGACTTTCTGGGCCTCACCAACGCCAGAGGAGGAAATGGCGGCGCGGTGGACGTTAGCATCGACGTGAAGGATATGCTAACATTCACGGGAGGNGTAGAGTACCACCACCACCAACAGCAACAACAACAACAGCCTCAACCACCACCTTACGAGCACCATCACAACAACACGCTGTTCAAGTCACAGCAACAATGTTTTGGATTTCTTGGGACAACCACTGCCCCCGAGTCTTGGGGGAATTGTTAAAGAGTCATTCCAAAACTACAAGGGTATAATTGGCAACTCAAGTTTTGCCTCATTAATATTAGCTTAACCCTTGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	481585	485720	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.527
SRR1783600	control	40.177
SRR1783602	moderate drought stress	52.115
SRR1811619	moderate drought stress	51.663

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.930
DRR006520	Root Summer glycyrrhizin high producing strain	27.584
DRR006521	Root Winter glycyrrhizin high producing strain	48.485
DRR006522	Root Winter glycyrrhizin high producing strain	47.745
DRR006523	Root Summer glycyrrhizin low producing strain	22.604
DRR006524	Root Summer glycyrrhizin low producing strain	21.592
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.155
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.259

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.542
SRR2868004	Drought Stress (root)	0.941
SRR2967015	Control (root)	1.431

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.877
SRR9715740	Leaf	1.692
SRR9715741	Leaf	3.357
SRR9715739	Root	13.013
SRR9715742	Root	11.600
SRR9715743	Root	11.156

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.303
SRR8749028	MeJA induced 9h	0.389
SRR8749029	MeJA induced 9h	0.077
SRR8749030	Uninduced	2.120
SRR8749031	Uninduced	1.190
SRR8749032	Uninduced	0.423

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.392
SRR8400027	Control - Root	27.049