Gene detail information of Glyur000016s00003066 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63430.1 | 3.00E-52 | |
| NR | XP_004495153.1 | 0 | PREDICTED: protein LONGIFOLIA 1-like [Cicer arietinum] |
| trEMBL | tr|G7ICP6|G7ICP6_MEDTR | 0 | DUF4378 domain protein {ECO:0000313|EMBL:AES60804.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 380159 | 383657 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003066.1 | PF14309.1 | DUF4378 | 298 | 437 | 1.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.556 |
| SRR1783600 | control | 2.598 |
| SRR1783602 | moderate drought stress | 2.014 |
| SRR1811619 | moderate drought stress | 2.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.092 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.145 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.121 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.948 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.874 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.328 |
| SRR2868004 | Drought Stress (root) | 17.249 |
| SRR2967015 | Control (root) | 15.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.451 |
| SRR9715740 | Leaf | 0.639 |
| SRR9715741 | Leaf | 1.157 |
| SRR9715739 | Root | 0.983 |
| SRR9715742 | Root | 2.556 |
| SRR9715743 | Root | 2.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.969 |
| SRR8749028 | MeJA induced 9h | 0.427 |
| SRR8749029 | MeJA induced 9h | 0.896 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.028 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.147 |
| SRR8400027 | Control - Root | 4.563 |