Gene detail information of Glyur000016s00003064.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03055.1 | 1.00E-47 | |
| NR | AEW07379.1 | 9.25E-111 | dwarf 27 [Medicago truncatula] |
| Swissprot | tr|C7AU21|D27_ORYSJ | 8.00E-68 | Beta-carotene isomerase D27, chloroplastic (Precursor) |
| trEMBL | tr|R4HZ96|R4HZ96_MEDTR | 3.00E-111 | Dwarf 27 {ECO:0000313|EMBL:AEW07379.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 368510 | 372830 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K17911 | DWARF27 | EC:5.2.1.14 | Carotenoid biosynthesis | map00906 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003064.1 | PF13225.1 | DUF4033 | 169 | 206 | 2.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.104 |
| SRR1783600 | control | 0.049 |
| SRR1783602 | moderate drought stress | 0.176 |
| SRR1811619 | moderate drought stress | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.090 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.146 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.805 |
| SRR2868004 | Drought Stress (root) | 13.270 |
| SRR2967015 | Control (root) | 8.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.110 |
| SRR9715741 | Leaf | 0.084 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.056 |
| SRR9715743 | Root | 0.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.165 |
| SRR8749029 | MeJA induced 9h | 0.176 |
| SRR8749030 | Uninduced | 0.152 |
| SRR8749031 | Uninduced | 0.138 |
| SRR8749032 | Uninduced | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.972 |
| SRR8400027 | Control - Root | 2.462 |