Gene detail information of Glyur000016s00003063 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38810.3 | 2.00E-54 | histone H2A 8 |
| NR | NP_001237025.1 | 2.78E-90 | uncharacterized protein LOC100306323 [Glycine max] |
| Swissprot | tr|O23628|H2AV1_ARATH | 9.00E-80 | Histone H2A variant 1 |
| trEMBL | tr|C6SYX2|C6SYX2_SOYBN | 1.00E-90 | Histone H2A {ECO:0000256|RuleBase:RU003556} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 365798 | 367429 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003063.1 | PF00125.19 | Histone | 31 | 105 | 6.70E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.738 |
| SRR1783600 | control | 2.581 |
| SRR1783602 | moderate drought stress | 1.709 |
| SRR1811619 | moderate drought stress | 1.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.240 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.144 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.721 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.892 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.235 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 72.340 |
| SRR2868004 | Drought Stress (root) | 34.662 |
| SRR2967015 | Control (root) | 37.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.106 |
| SRR9715740 | Leaf | 3.361 |
| SRR9715741 | Leaf | 11.410 |
| SRR9715739 | Root | 19.728 |
| SRR9715742 | Root | 8.918 |
| SRR9715743 | Root | 9.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.821 |
| SRR8749028 | MeJA induced 9h | 12.413 |
| SRR8749029 | MeJA induced 9h | 33.331 |
| SRR8749030 | Uninduced | 5.716 |
| SRR8749031 | Uninduced | 1.895 |
| SRR8749032 | Uninduced | 5.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.774 |
| SRR8400027 | Control - Root | 40.251 |