Gene detail

Gene detail information of Glyur000016s00003054

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47720.1	5.00E-26	Primosome PriB/single-strand DNA-binding
NR	XP_003590533.1	2.40E-155	Single-stranded DNA-binding protein [Medicago truncatula]
COG	YP_004168869.1	4.00E-08	single-strand binding protein [Nitratifractor salsuginis DSM 16511]
Swissprot	tr\|Q9SX99\|OSB1_ARATH	3.00E-32	Protein OSB1, mitochondrial (Precursor)
trEMBL	tr\|G7ICM6\|G7ICM6_MEDTR	9.00E-156	Single-stranded DNA-binding protein {ECO:0000313\|EMBL:AES60784.1}

Sequence

Transcript Sequence

>Glyur000016s00003054.1
ATGAAACTGATAGTGAGAGTGAGAGTGAAACGGGGCGACACGCCAATACGCCANTCGAATTCCCTTATCGTTAGTTCCTCCTTACTAGCATTAGCATTGTGGAAGAAAGAACGGGAAATGGCGGTAGAGCAGGCAGCAGCAGCAGCATCAACTCGCTTGAGGAACCTCCTCACATTCCCCCAAAACCCTAATTCCACCCCCAAATTCCAAGTCCCATTCCCATGCTGGAGAACAACGCAGCCTTGGAAGTTGAAGTTGAAGTGCTCCTCCGATTCCATGACCAATACTGCGGCGTCCCCACCTAAGCCCTCCGAGATTCCGTGGCAGAAGGAGCTTTGCAACTCCGTCAACCTCATCGGCTTTGTCGCCNCCCCCGTCGAGGTAAAAAACTTCCCCTCCGGCAAAGTCCTCGCCTGGACCCGCCTCTCCGTCAAGAAAAACCCCACCCAAACCTCCTTCATCCACCTCACTTTCTGGGACGACCTCGCCCACGTTGCTTCTCACCACGTGCAGAAAGGCCACCAAATCCACGTTTCTGGTCGCCTCGTAACCGACACCGTCGAAACCGATGAAGGCAAACAACAAACCTACTACAAGGTGGTTGTTCAGCAGCTGAATTTCATTGATAGGAGTTTAGCGCCGGTGTCCTCGCATGATCAAGACTCTGATTTCACGATTGCTGACAGCGGGAGAAAAGTGAGTTATGCTGCAAATAGTACTGGTTCTGTGGTGGAATTATGGCAAGCTTTCTTTGCTAACCCAGGGGAGTGGTGGGACAATAGGAAGACAAAGAGGAACCCGAAAGCTCCTGATTTTAAACACAAGGATACCGGAGAAGCTCTGTGGATTGATGGCAGATCCAATCCACCATGGGTTAAATCCCAACTGGAAATTTTAGACATGAGGATGGGGTCTCATGCTGGTCAAAACGGTAGGATGCCTGTAGATATGGTGACCGCAGATGAAATCTTGTCTTTCTAAAAGCTATGCCACAAAACGTAATATTTTATTTCAACTAGGAAACTTCTTTGTGCAGTTTGCATTTTGTCCGTAAATTTTAGTTCTACATATGAGGGCATTGTGTATATGGTCTGTGGTGGTATGTTAACTGGGTTGATCGNAGTGGCCTTCTCTGTTTTATCAGCCGCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	308001	310281	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

molecular_function
GO:0003697 single-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003054.1	PF00436.20	SSB	114	207	1.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.022
SRR1783600	control	18.571
SRR1783602	moderate drought stress	22.846
SRR1811619	moderate drought stress	22.515

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.139
DRR006520	Root Summer glycyrrhizin high producing strain	27.270
DRR006521	Root Winter glycyrrhizin high producing strain	14.400
DRR006522	Root Winter glycyrrhizin high producing strain	14.184
DRR006523	Root Summer glycyrrhizin low producing strain	27.794
DRR006524	Root Summer glycyrrhizin low producing strain	27.123
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.443
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.105

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.316
SRR2868004	Drought Stress (root)	21.949
SRR2967015	Control (root)	20.360

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.926
SRR9715740	Leaf	35.675
SRR9715741	Leaf	16.143
SRR9715739	Root	28.686
SRR9715742	Root	19.674
SRR9715743	Root	20.454

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	69.399
SRR8749028	MeJA induced 9h	20.809
SRR8749029	MeJA induced 9h	37.670
SRR8749030	Uninduced	3.684
SRR8749031	Uninduced	3.324
SRR8749032	Uninduced	5.220

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.702
SRR8400027	Control - Root	25.432