Gene detail

Gene detail information of Glyur000016s00003050

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43700.1	9.00E-58	AUX/IAA transcriptional regulator family protein
NR	KHN18839.1	7.06E-112	Auxin-induced protein 22D [Glycine soja]
Swissprot	tr\|O24542\|AX22D_VIGRR	5.00E-106	Auxin-induced protein 22D
trEMBL	tr\|I1JF49\|I1JF49_SOYBN	3.00E-112	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000016s00003050.1
GCCAACTATTCTTCACACCACATCTTCAAATTCAATTATATCATCTCACTTCTCTCTCCTCCTCCTAAAAAATCATACAGAAACTGCACAGTTTTTGGATTTGGAATTGATCAGATCGAGTGAATAGAAATTGCAAGCAGATACACAAATATATATATATATCAAGAAATGGAGAATTACAAAACAGAGCTGAATCTGAAGGACACAGAGTTAAGGTTGGGGTTGCCCGGCACCGATGAGCTGGCGCCAGAGAAACGTTCTGTTGTTAGAAGCAGCAACAAGAGATCTTCCCCAGAAGCCAGTGAGGTTGAATCCATAAACAAGAGTAACGTGAATAATTCTAATNGTTCCGATGCCACAAGTGATGACCAAGACAATGTTCCACCTGCAAAGGCACAAGTAGTGGGATGGCCACCGATTCGATCTTTTAGGAAGAATAGTGTGCAACAACAGAAGAAGAGTGAACAGGGTGGGATGTACATGAAGGTGAGCATGACGGGTGCACCTTACTTGAGGAAGATAGATCTCAGGGTTTACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAACATATGTTCAAGTGCACATTTGGTGAATATTCAGAGAGGGAAGGCTACAATGGATCTGAATATGCTCCAACTTATGAAGATAAGGATGGTGACTGGATGCTGGTTGGTGATGTTCCTTGGAACATGTTCATGTCTTCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGATTGGGTTGTTTTTGAACCAAAAAGCAATTAAACCATGACAAACATACATATATCCAAAACATGGAGCAAAACGAATAACAGGGACGCCATCCGAGAGAATTTATTCCTCTATTTGGGTTGTTCAATCAAGCACTTTGTCCTCTCAAGTCTTGTAGAGGCACATTTAATTAGCTGATTAAAAACATAGAGACAATTAGACACTTTTCTTTTCCTTTATTTTTATTTATTATTTGAACAGCTAGTTNCCTTTCAGGCCTCAAAGTGCTTAAGTATATATACTCTTCTTCTGAATCCTCAAAGCCACAACCGGAATGGAAAACAGAGATATTGGAAGGAGAGAAAGAGAATAAAAGAAAAGCAAATGCTATTCTATTTTTAATTGTACAGAGGATATATATAATACTTCATTTTGTCCTATATCTGTTCATGTATAAAAATTATATATGTACACAAAAGAGGATCGAGAAGGCGCAACTTTCAATTTTATTCCTTTTTTTTTTAATATATTGTTTGGTTTTGATTTGATTTGATCTATGTTTCTTTGTACTTGATTTCAAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	302472	304240	+

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003050.1	PF02309.11	AUX_IAA	8	197	2.50E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.068
SRR1783600	control	1.171
SRR1783602	moderate drought stress	1.863
SRR1811619	moderate drought stress	1.868

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.277
DRR006520	Root Summer glycyrrhizin high producing strain	10.318
DRR006521	Root Winter glycyrrhizin high producing strain	0.453
DRR006522	Root Winter glycyrrhizin high producing strain	0.497
DRR006523	Root Summer glycyrrhizin low producing strain	6.063
DRR006524	Root Summer glycyrrhizin low producing strain	5.906
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.897
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.135

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.556
SRR2868004	Drought Stress (root)	7.854
SRR2967015	Control (root)	6.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.056
SRR9715740	Leaf	6.960
SRR9715741	Leaf	6.586
SRR9715739	Root	0.149
SRR9715742	Root	2.198
SRR9715743	Root	2.053

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	198.986
SRR8749028	MeJA induced 9h	185.469
SRR8749029	MeJA induced 9h	270.898
SRR8749030	Uninduced	32.210
SRR8749031	Uninduced	53.082
SRR8749032	Uninduced	55.966

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.849
SRR8400027	Control - Root	11.076