Gene detail information of Glyur000016s00003046 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14550.1 | 1.00E-28 | indole-3-acetic acid inducible 14 |
| NR | XP_007144686.1 | 6.88E-60 | hypothetical protein PHAVU_007G176600g [Phaseolus vulgaris] |
| Swissprot | tr|P13089|AUX28_SOYBN | 6.00E-44 | Auxin-induced protein AUX28 |
| trEMBL | tr|V7BGN7|V7BGN7_PHAVU | 3.00E-60 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 288905 | 292979 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003046.1 | PF02309.11 | AUX_IAA | 109 | 172 | 1.50E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.329 |
| SRR1783600 | control | 0.415 |
| SRR1783602 | moderate drought stress | 1.765 |
| SRR1811619 | moderate drought stress | 1.889 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.526 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.743 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.121 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.118 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.182 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.193 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.730 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.074 |
| SRR2868004 | Drought Stress (root) | 7.840 |
| SRR2967015 | Control (root) | 9.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 56.894 |
| SRR9715740 | Leaf | 26.814 |
| SRR9715741 | Leaf | 21.830 |
| SRR9715739 | Root | 0.533 |
| SRR9715742 | Root | 6.620 |
| SRR9715743 | Root | 6.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 230.028 |
| SRR8749028 | MeJA induced 9h | 140.198 |
| SRR8749029 | MeJA induced 9h | 260.544 |
| SRR8749030 | Uninduced | 7.568 |
| SRR8749031 | Uninduced | 3.727 |
| SRR8749032 | Uninduced | 15.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.882 |
| SRR8400027 | Control - Root | 23.904 |