Gene detail information of Glyur000016s00003044 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30550.2 | 0 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_003518894.1 | 0 | PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Glycine max] |
| COG | NP_847303.1 | 9.00E-12 | lipase [Bacillus anthracis str. Ames] |
| Swissprot | tr|Q941F1|PLA15_ARATH | 0 | Phospholipase A1-Igamma1, chloroplastic (Precursor) |
| trEMBL | tr|I1JF46|I1JF46_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G16050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 272668 | 275776 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003044.1 | PF01764.20 | Lipase_3 | 212 | 370 | 2.30E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.072 |
| SRR1783600 | control | 0.096 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.624 |
| SRR2868004 | Drought Stress (root) | 11.805 |
| SRR2967015 | Control (root) | 8.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.002 |
| SRR9715741 | Leaf | 0.085 |
| SRR9715739 | Root | 0.177 |
| SRR9715742 | Root | 0.202 |
| SRR9715743 | Root | 0.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.700 |
| SRR8749028 | MeJA induced 9h | 2.893 |
| SRR8749029 | MeJA induced 9h | 3.523 |
| SRR8749030 | Uninduced | 1.710 |
| SRR8749031 | Uninduced | 1.495 |
| SRR8749032 | Uninduced | 1.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.316 |
| SRR8400027 | Control - Root | 1.248 |