Gene detail

Gene detail information of Glyur000016s00003041.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06780.1	2.00E-148	galacturonosyltransferase 6
NR	XP_004495140.1	0	PREDICTED: probable galacturonosyltransferase 6-like isoform X3 [Cicer arietinum]
Swissprot	tr\|Q9M9Y5\|GAUT6_ARATH	0	Probable galacturonosyltransferase 6
trEMBL	tr\|I1JF40\|I1JF40_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G15990.1}

Sequence

Transcript Sequence

>Glyur000016s00003041.1
ATGAAGCAATTTCGTCAGCGCCAGAGGATCTTCATCCTCTCTTTGCTCTCTCTNTCCGTCGTTGCTCCTCTCATCTTCGTCTCTCACAGACTTAAGCTTCTCACTCCCCTCGGTACTCTCTCTAACCTCGCGCGCGCGCGCACATACAGGACGGATACTTTCAAGTTAAATGCTGTAGAACAGGAAGGTTCTGAAGAATTAGAAGAGCCAAGTCAAATTGTTTATAAAGAAAGAGATGTTTCAACAATTAGTTACAATTCAGNAAATAATAATGATTCTGAGGAATCTAGAATTGCAGGGTACAGAAGTACCCCTTTGGAAAGAAATGGATTCAACCATGATAAAAGACAACACCAGGGTGCTCAGCAGAAAGATTTATCCTCCACAGCTGAAGATACGAATATGCATGCTTATTCACATAGAACACCAAAGGAGAATGTTAAAGTGACAAATAGGCCATNGGTTCAAAAAGCAACGACCCATCATCATCATATTTTAGACCCTCACTCTAATAAAGTGGAAAATCAGAAGGTTCAAGAGATTAAGGATCAAATTGTTATGGCTAAAACATACTTGAATATTGCATCACCAAGCAGCAACTCACGCCTGAAGGAGCTGGAGCTGCAAATGAAAGAGATGGAACGAGCAGTTGGGGAAGCCACCCTGGATTCAGATTTGTCAAGGAGACGCATGGAGGCTTCACTGTCTGATGTCAGCCGAGCTTTCCCAGACTGCTCTGCTATGGCTGCTAAGCTTCATGCAATCAAGCATAAAACTGAAGAACAAGTTCGTTTTCAGCGAAATCAAGCAACATATCTTGTTCATCTTGCTGCAAAGACTGCCTCGAAAGGCCTTCACTGTCTTTCNATGCGGCTGACTGCTGAATATTTTGCCCTGCGGCCTGAGGAGAGAAAGCTTCCAAATGAAAATAAGATTAGTCATCCAGAACTTCATCATTATGCTGTCTTCTCTGACAATGTTCTTGCATGTGCAGTGGTTGTTAACTCTACTGTCTCTACTGCCAAGGAACAGGATAAACTTGTTTTCCACATAGTGACCAATTCACTCAACTTACCAGCGATCTCAATGTGGTTCTTAATGAACTCCCCAGGCAAAGCCACAGTCCATATACAGAGCATAGACAACTTTGAATGGTTGTCCAAGTACAATACCTTCGGTNAAAACAATACCAGCGATCCAGGATACATTTCTGAATTGAACTACCTGCTTTTCTACCTGCCAGACATTTTCCCTGCCCTAAATAAGATTGTGATCTTTGATCATGATGTGGTGGTTCAACAAGATCTCACTGGACTATGGAAAACCAACATGAAGGGAAATGTAATTGGAGCAGTTGGAACTTGTCAGGAAGGCAAAATCCCATTTCACAGGATTGATATGTTCATAANCTTCTCAGATCCATTAATTGGAGAGAGGTTTGATGTCAATTCTTGCACATGGGCATTTGGGATGAATTTGTTTGATTTGCAACAGTGGAGGAGACATAATTTAACTGCTGTTTATCACAAATATTTTCAAATGGGTTCTGAGAAGCCATTGTGGAACTGGAATGTTGGACGTCTGCCTTTAGGCTGGCTCACCTTCTATAACAAGACAGGTGTGTTGGACAGACGATGGCACATTCTTGGCCTTGGTCATAACTCGGGTGTCGACCGAAATGAGATTGAGCAAGCTGCTGTTATCCACTATGACGGGATGAGGAAGCCATGGTTGGATATTGCAATGGGCAGATATAAAAGTTATTGGACCAAATTTTTGAATTTTGACCACCCTTTTTTGCAACAATGCAATCTCCAGGGATAGTTCAAAATCCAAAATTTGTCTTTCTGGACCTGGCTTCTATTGTTGACAAGTCTGATAGCACATTAATCGCTTGATTCCCTTTATTCTTTCTGTAATTCATCGTGTAAAGCTCTCCATACCTCCCAAAAATGTTCAAGCCAATTTACATCGCGTTTTTTAGTGGATGCCGATGCTACCGGTTCTTGTCTACATAATCTTTGGTACTATCTTAATTTATGCCAACGTTCTTTGTTAGTTCACATGGAAGAACAAATTTACAAATTAGAGATGACAGCTGCGTTTTGAATTCTTCCGTGAGGATGACNTGATCTCTAATATTTACATAGCGGAAAGGAAAGACCAAAGGTTATTGAAGATCAGAAGCAAAACTGGACATCACAGCCAAAGGTTAGAAAGGCTGAAGAGGGTTGTTGTATCTCTTACCATTGTAAGATTAGTTGAAAATGGTTATGCTGATTTTTATTTCACGTGGTTGTGCTATGGCCGGTCTAATTTTTTGAAGGCGCTCTTGGAAAACCCCCAATGTTATTGATATNTATGTACTGTATTTTGAGTGGAATAAATTGTTTTTATGGTTGGTGGAGTTTTATTCTCACCCCACTTAAGGGGGTTAAAAAACTAAGGTTAGGCATTCACTTACGTTCTAATTATTTCTGTTGGGGGTGGAAGTGAAGCTTGGAGCCTTGGACTACGTTGGGGAAATATTGGNCATCGAATGGATTATCTGACACGTGTATGAAAATTATTCGACTGCTGCAGATAAGGATATCTAACGAGGGGCTTCGGATCTACCTTTGTTTTGTGGCGCATGGACTGTCTTTGCACCAATAATATTAATATTAATTTTGACAATTTTGCGTTATTCTTGTGAACACAATTGTCTGGAGCACAGAAGTAGCCTAGTCATACTCTATCATTTCGTTTCCGAACCACAGTCAGTGAACAAAAAAAATGGCAACCATCTCCGCTACTACCACAACCCCATCGATCACCCGTGCTGGTCTTGTGCAAAAGCGACCTCTTGTGGTCTCATCCTCTCCCGTTCTTGGGTTGCCAGAAATGGGCAAGGTGGGAAGAGTGAGGTGCTCCATGGAGCAGGGAAAGCCATCTGTGAAGGAAAGCAGCTCAAACATGGGGATGGGGGCATCTTTGGTAGCAGCTGCCTGTGCTGCAGCCATGTNAAGCCCAGCAGCGATGGCGTTGGTGGATGAGAGAATGAGCACTGAAGGAACAGGGCTTCCCTTTGGGCTCAGCAACAACCTTCTTGGGTGGATCCTCCTTGGTGTCTTTGGTCTTATTTGGGCTCTCTACATTGTATACACTTCCAGTCTTGACGAGGATGAAGAGTCAGGACTATCCCTTTAGAGCGCGCCTGGGCCATCATGGATATTGTAGANATTGCAAAAGAGTCCCAGTCTCATTTAGTGCTGTATCAAAACAAATTATGTGATTAATTTCCTCCTCNTTCTCCTTGAACTCTCGATCTTCATTACTTGTTTCGCTTGTTTGTTTAATTTGTTGCACTAACACGCAATGTGCCACTGTCCTTGAATGGAAAAGGAGACGAGTAGAAGCATTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	257604	265069	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13648	GAUT	EC:2.4.1.43	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003041.1	PF01501.15	Glyco_transf_8	287	580	9.30E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.451
SRR1783600	control	8.726
SRR1783602	moderate drought stress	5.526
SRR1811619	moderate drought stress	5.419

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.262
DRR006520	Root Summer glycyrrhizin high producing strain	6.324
DRR006521	Root Winter glycyrrhizin high producing strain	2.799
DRR006522	Root Winter glycyrrhizin high producing strain	2.670
DRR006523	Root Summer glycyrrhizin low producing strain	4.893
DRR006524	Root Summer glycyrrhizin low producing strain	4.847
DRR006525	Leaf Summer glycyrrhizin high producing strain	163.825
DRR006526	Leaf Summer glycyrrhizin high producing strain	170.007

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.417
SRR2868004	Drought Stress (root)	11.830
SRR2967015	Control (root)	9.063

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	227.969
SRR9715740	Leaf	196.877
SRR9715741	Leaf	153.398
SRR9715739	Root	2.719
SRR9715742	Root	5.698
SRR9715743	Root	4.943

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.023
SRR8749028	MeJA induced 9h	9.897
SRR8749029	MeJA induced 9h	8.734
SRR8749030	Uninduced	2.246
SRR8749031	Uninduced	0.784
SRR8749032	Uninduced	1.927

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.672
SRR8400027	Control - Root	11.772