Gene detail

Gene detail information of Glyur000016s00003037

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08230.2	1.00E-55	Transmembrane amino acid transporter family protein
NR	KEH42612.1	0	transmembrane amino acid transporter family protein [Medicago truncatula]
Swissprot	tr\|F4HW02\|GAT1_ARATH	6.00E-78	GABA transporter 1
trEMBL	tr\|A0A072VL89\|A0A072VL89_MEDTR	0	Transmembrane amino acid transporter family protein {ECO:0000313\|EMBL:KEH42612.1}

Sequence

Transcript Sequence

>Glyur000016s00003037.1
ATGGGCTCACTAGCAGACCGTAGCTCAACACCAGAGGTAGGGAGATCNGAAGATGGTGCAGAAGAAGGAGTAAGTGGTAAAGGAACATGGAAGCACGCGGCTTTCCATGTGGCCACCACTATTGCCACCCCTGCAGCTTATGCCCCTTTGCCTTTTGCTCTTGCTTCTCTAGGTTGGCCTCTTGGTGTGAGTAGCCTGGTGAGTGCAACACTAGCCACCTGGTACTCTAGCATTTTGATCGCTTCTTTGTGGAANTGGAATGGGGAGAAGCACCTTACCTATAGACATCTTGCACATAGTATTTTTGGATTCTGGGGGTACTGGTCTATTGCCTTGTTCCAGCAGGTAGCTTCTTTGGGAAATAACATTGCTGTCCAGATTGCAGCTGGTAGCAGCCTTAAGGCAGTTTACAAGCACTATCACTCAGATGGAAAATTAACACTGCAACATTTTATTGTTTTCTTTGGAATCTTTGAACTGTTGCTCTCTCAGCTCCCTGATATTCACTCACTGAGATGGGTAAATGCATTGTGCACTTTCTGCACAATTGGCTTTGCTGGTACAACCATTGGTGTTNCCATTTACAATGGGAAGAAGATTGATAGAACATCAGTAAGCTATAGTGTTCAGGGTAGTTCTGCGTCTAAGTCCTTCAAAGCCTTCAATGCCCTTGGAACCATTGCCTTTTCATTTGGTGATGCAATGCTTCCAGAAATACAGAATACAGTGAGAGAACCTGCAAAGAAGAATATGTACAGAAGCATATCAGCAGCATACACTGTCATTGTTTTGACTTACTGGCAGTTGGCTTTCTGTGGATATTGGGCTTTCGGATCAGAAGTCCAACCATATATTTTAGCTTCTTTGTCTATTCCAGAATGGACTGTAGTTATGGCAAATTTATTTGCAGCTATTCAAATATCTGGATGCTTTCAGATATACTGCAGGCCAACATATGCCTATTTTGAGGAAAGAATAGAGACCAACAAATCTACTAGAAGTTTCCCCCTAAGAAATCACTTGATACGACTTTCTTTTACTTCCATATACATGACTCTTGTTACTCTTATTGCTGCAGCTATGCCCTTTTTTGGGGATTTTGTGTCCATCTGTGGGGCAATCGGGTTTACTCCTCTGGACTTTGTGTTCCCTGCTTTAGCATACCTTAAGGCTGGAAATATAGCCAAGAACTCCAAACTTGGCCTTTTGATGCGGCCATTAAATGTTTTAATAGCTTCCTGGTTCTCAATCGTTGCTATCTTGGGTTGCATTGGTGCAGTCAGATTCATAGTGGAAGATATCAAGAACTACAAGTTCTTCCATGATATGTAAAAGAATTTTGGACTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	242513	245583	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003037.1	PF01490.13	Aa_trans	27	424	2.10E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.207
SRR1783600	control	0.183
SRR1783602	moderate drought stress	1.220
SRR1811619	moderate drought stress	1.240

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.450
DRR006520	Root Summer glycyrrhizin high producing strain	0.378
DRR006521	Root Winter glycyrrhizin high producing strain	0.805
DRR006522	Root Winter glycyrrhizin high producing strain	0.643
DRR006523	Root Summer glycyrrhizin low producing strain	0.348
DRR006524	Root Summer glycyrrhizin low producing strain	0.343
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.597
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.812

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.006
SRR2868004	Drought Stress (root)	3.278
SRR2967015	Control (root)	2.313

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.343
SRR9715740	Leaf	6.482
SRR9715741	Leaf	10.282
SRR9715739	Root	0.492
SRR9715742	Root	0.175
SRR9715743	Root	0.520

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.315
SRR8749028	MeJA induced 9h	0.773
SRR8749029	MeJA induced 9h	0.675
SRR8749030	Uninduced	1.472
SRR8749031	Uninduced	1.025
SRR8749032	Uninduced	0.618

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.784
SRR8400027	Control - Root	1.326