Gene detail information of Glyur000016s00003036


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G49100.18.00E-53Signal recognition particle, SRP9/SRP14 subunit
NRXP_004495135.16.83E-69PREDICTED: signal recognition particle 9 kDa protein-like [Cicer arietinum]
Swissprottr|Q9SMU7|SRP09_ARATH2.00E-67Signal recognition particle 9 kDa protein
trEMBLtr|A0A072VLU9|A0A072VLU9_MEDTR1.00E-68Signal recognition particle 9 kDa protein {ECO:0000256|PIRNR:PIRNR017029}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00016237971241510-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006614  SRP-dependent cotranslational protein targeting to membrane

GO:0045900  negative regulation of translational elongation


cellular_component

GO:0048500  signal recognition particle


molecular_function

GO:0008312  7S RNA binding

"


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000016s00003036.1PF05486.7SRP9-213731.20E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.194
SRR1783600control23.109
SRR1783602moderate drought stress19.887
SRR1811619moderate drought stress19.908

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.775
DRR006520Root Summer glycyrrhizin high producing strain27.153
DRR006521Root Winter glycyrrhizin high producing strain16.762
DRR006522Root Winter glycyrrhizin high producing strain16.551
DRR006523Root Summer glycyrrhizin low producing strain30.782
DRR006524Root Summer glycyrrhizin low producing strain30.682
DRR006525Leaf Summer glycyrrhizin high producing strain14.370
DRR006526Leaf Summer glycyrrhizin high producing strain14.083

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)50.879
SRR2868004Drought Stress (root)42.204
SRR2967015Control (root)36.034

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf23.948
SRR9715740Leaf27.198
SRR9715741Leaf28.565
SRR9715739Root8.704
SRR9715742Root12.073
SRR9715743Root13.627

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h73.157
SRR8749028MeJA induced 9h23.833
SRR8749029MeJA induced 9h47.161
SRR8749030Uninduced18.032
SRR8749031Uninduced9.938
SRR8749032Uninduced15.521

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root31.974
SRR8400027Control - Root31.301

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved