Gene detail

Gene detail information of Glyur000016s00003035.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30590.1	5.00E-97	WRKY DNA-binding protein 21
NR	KHN32331.1	0	Putative WRKY transcription factor 21 [Glycine soja]
Swissprot	tr\|O04336\|WRK21_ARATH	6.00E-128	Probable WRKY transcription factor 21
trEMBL	tr\|V7BGP8\|V7BGP8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW16695.1}

Sequence

Transcript Sequence

>Glyur000016s00003035.1
TGAGCTACAAATATAATATATATTATATTATTATTTTTTCCTTGCTGCTTAGGACTTTAATATATATATTTAGTCTAAAGTTGGAAGCTTTGTATTCTTATGTATGATGGTTGTGTGAATTCTCAAGGGAAGCAAAGTCCTCTCTTTCCCACCTTCAATCTCAAAACCATGGGAAGAAGAATCTAGGGTTTGACAGCACCAAGTCCATCAAGTTTTCAAAATTTTGATAGATAGCATAGAGGCTAATATGGAAGAAGTGGAACAAGCTAACAGGGCAGCTGTTGAAAGCTGTCATAGAGTTCTAAGTATGTTGTCTCAACCCCGGGATCAGGTTCAGCATAGGAACTTAATGGTGGAAACTGGGGAAGCTGTGATGAGGTTCAAGAAAGTTGTTTCCTTGCTTNATAATGGTTTGGGTCATGCAAGAGTGAGGAAGTTTAAGAAAATTCAACAAACCCCCTTTTCCCAAACTATCTTCTTAGACAACCCAATTTGCAAAACCAACCATCACTACTCCAAAAATCTTCAGTTTCCCCAAACTAGCTATCCTGAGAATTCAGTTCAGGAACTGGGCTCAACCATAAAAAATTCACTCTCTTTGGGAAATCCTTCTTTGGAATTGAGCTCCAGCGGGAAAAGTCCTCTTCAGCTTGCCCAACAAGCTTCATCAACTCACTATCACTTCTTTCAGCAGCAGCAACAACAAAGGCTTTTGCTGCAGCAGCAGCAGCAGCAGATGAAGCATCAAGCAGAAATGATGTTCCGAAGGAACAATAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCAACTAGGTCTTTCATTTCTTCCTTGAGCATAGATGGAAGCGTAGCTAACTTAGATGGAAGTTCCTTCCACTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCACAACAGCACAAGAGAAAATGTTCTGCCAGAGGTGATGAGGGAAGCTTGAAATGTGGGAGCAGTGCTAGATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTATGGGCAGAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATATTATAAGTGTAGCAGCATGAGAGGCTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTACCATGCTAATTGTTACCTATGAAGGCGAGCATAACCACCCTAAGTTACCAACACAATCTGCAAATGCATGAATGAACTACATTGAGATAGCTGAACCAAGACCAAGCCCATCATTCAATTTGTCAAAACCTCACTTTATGTGATTGGCTTGAGATGTTTCTGTACATATTTTTCAGTGATGCAAGCAGGGATATACTCTGGTGCAGATTCTGGCTTTTGGATAGTTTGGCTAACGAGTTGTTTATTTAGAGGGTGGGGATGGGTGAGGATGGATTACTGGTTGGTTAAGTGAAGAAGTAATGTAAAATTGGGTAGTTTCAATTCGTAAGAACTATTTTGTCTTTTCTTAAGCATGTTATAAACATTTCAGGGTTTTCTAAATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	228103	231069	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003035.1	PF10533.4	Plant_zn_clust	233	278	5.80E-17
Glyur000016s00003035.1	PF03106.10	WRKY	282	340	8.00E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	96.530
SRR1783600	control	97.143
SRR1783602	moderate drought stress	107.410
SRR1811619	moderate drought stress	106.888

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	163.620
DRR006520	Root Summer glycyrrhizin high producing strain	161.650
DRR006521	Root Winter glycyrrhizin high producing strain	89.096
DRR006522	Root Winter glycyrrhizin high producing strain	86.602
DRR006523	Root Summer glycyrrhizin low producing strain	215.077
DRR006524	Root Summer glycyrrhizin low producing strain	214.316
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.042
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.394

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.725
SRR2868004	Drought Stress (root)	58.239
SRR2967015	Control (root)	80.492

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.884
SRR9715740	Leaf	26.599
SRR9715741	Leaf	29.826
SRR9715739	Root	39.771
SRR9715742	Root	96.969
SRR9715743	Root	89.029

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	94.949
SRR8749028	MeJA induced 9h	62.821
SRR8749029	MeJA induced 9h	74.988
SRR8749030	Uninduced	16.387
SRR8749031	Uninduced	14.115
SRR8749032	Uninduced	19.192

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.685
SRR8400027	Control - Root	78.247