Gene detail information of Glyur000016s00003034 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09500.1 | 3.00E-66 | Ribosomal protein S19 family protein |
| NR | XP_004495132.1 | 3.41E-103 | PREDICTED: 40S ribosomal protein S15-4-like [Cicer arietinum] |
| COG | YP_003650076.1 | 4.00E-41 | 30S ribosomal protein S19 [Thermosphaera aggregans DSM 11486] |
| Swissprot | tr|P31674|RS15_ORYSJ | 2.00E-95 | 40S ribosomal protein S15 |
| trEMBL | tr|V7BJF1|V7BJF1_PHAVU | 2.00E-102 | Uncharacterized protein {ECO:0000313|EMBL:ESW16696.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 221570 | 223155 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003034.1 | PF00203.16 | Ribosomal_S19 | 53 | 134 | 1.60E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 196.772 |
| SRR1783600 | control | 197.131 |
| SRR1783602 | moderate drought stress | 113.086 |
| SRR1811619 | moderate drought stress | 112.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 185.967 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 184.613 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 176.970 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 171.157 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 139.797 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 140.686 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 83.590 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 82.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 481.619 |
| SRR2868004 | Drought Stress (root) | 313.536 |
| SRR2967015 | Control (root) | 305.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 207.755 |
| SRR9715740 | Leaf | 191.208 |
| SRR9715741 | Leaf | 175.825 |
| SRR9715739 | Root | 199.092 |
| SRR9715742 | Root | 196.622 |
| SRR9715743 | Root | 193.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 509.682 |
| SRR8749028 | MeJA induced 9h | 152.843 |
| SRR8749029 | MeJA induced 9h | 350.888 |
| SRR8749030 | Uninduced | 60.534 |
| SRR8749031 | Uninduced | 39.759 |
| SRR8749032 | Uninduced | 92.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 343.350 |
| SRR8400027 | Control - Root | 315.865 |