Gene detail

Gene detail information of Glyur000016s00003033

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30620.1	1.00E-25	winged-helix DNA-binding transcription factor family protein
NR	CDN30079.1	9.13E-59	histone H1 subtype 5 [Vavilovia formosa]
Swissprot	tr\|P26569\|H12_ARATH	7.00E-42	Histone H1.2
trEMBL	tr\|G8YZP6\|G8YZP6_PEA	5.00E-50	Histone H1 subtype 3 {ECO:0000313\|EMBL:CCA94454.1}

Sequence

Transcript Sequence

>Glyur000016s00003033.1
ATCAAAATTCGTTCCATTCCTCTCACACCGAAATTTCCAATTCCCAGTCTCAAATTTTCCTTCACATCTTTCAATTTCCTCCCCAATATAATTACTAGCCTTAAACACCGCCATGGCGACGGAAGAGCCCATTGTCGCGGTGGAACCCGCATCCGAACCTATCAACGCCGAACCACCAACCGAGGAGAAAGAGGAACCCAAACCTGAAGCAGCAGCCAAGGCGAAGAAAACCAAGGACCCCAAACCTAAGAAAGTTTCCAAACCACGGAATCCTGCTTCGCATCCTTCTTACGAAGAGATGATTAAGGATGCGATTGTGACGCTGAAGGAGAAGACAGGGTCGAGCCAATACGCGATCACGAAGTTCATTGAAGAGAAGCACAAGCAGCTTCCTTCNAACTTCAGGAAGCTTTTGCTCTACCATTTGAAGAAGAACGTCGCTTCTGGAAAGCTTGCCAAGGTTAAAGGCTCCTTTAAGCTCTCGCCGGCGACCAAGCCTTCATCGGTGACTTCGTCTTCCCCATCGAAGAAGAAGCCCGTGGCCGCAAAGCCCAAGCCCAGTGCAACTGCCACCGCTAAGGTTTCAAAGGCCAAGCCAGCGGCGAAGCCAAAGCCAAAGGCTAAAGCTGCGGCCAAGCCAAAGGCNGCTTCGAGGACCAAAACTGTTGCGGCGAAGCCCAAGCCCAAGCCTGCTGCTGCCAAGCCCAAAGCTGCTGCGGCCAAGCCGAAGGCAGCTGCGAAACCGAAGCCACCGGCGAAGGCTGCAAGGACGTCGACGAGGACATCGCCGGGGAAGAAAGCCCCTGCTTCAAGGCCAGCACCGAAGAAGGTTGCTGCTTCTGTGAAAAAAGCTCCGGTGAAGAGCGTGAAGCCGAAGAGTGTGAAGTCTCCGGCGAAGAAGGCTTCGACGAAGAGAGGAGGAAGGAAGTGAGAATCGGAGGGTAGCAATAGCATAAAAGTCTTTTTTATAGAGCTAGCGAGCGTTGTATAGTTCTTTTATCCTTTGGTGTAGTTTGATATCAATATCAATATCAATAGATGTTCCTTATAACATAAAATCTGATTTTATCAATCTTCTTTTGTTTTTACTTGTTCGATCTAGGTATTAGATGAAGCTTCTCGCTTCTATGTTTGAGNTTAATGAATTAATCATAAATGCAGCTTAGAGTGAGGCTTTTCTGCATTACAATATTAATGACCTCGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	216032	217342	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003033.1	PF00538.14	Linker_histone	56	124	5.00E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	671.784
SRR1783600	control	678.643
SRR1783602	moderate drought stress	914.484
SRR1811619	moderate drought stress	915.339

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	582.534
DRR006520	Root Summer glycyrrhizin high producing strain	576.066
DRR006521	Root Winter glycyrrhizin high producing strain	216.483
DRR006522	Root Winter glycyrrhizin high producing strain	214.109
DRR006523	Root Summer glycyrrhizin low producing strain	504.173
DRR006524	Root Summer glycyrrhizin low producing strain	506.206
DRR006525	Leaf Summer glycyrrhizin high producing strain	85.738
DRR006526	Leaf Summer glycyrrhizin high producing strain	85.852

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	119.333
SRR2868004	Drought Stress (root)	134.108
SRR2967015	Control (root)	145.102

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	83.515
SRR9715740	Leaf	94.791
SRR9715741	Leaf	105.976
SRR9715739	Root	350.415
SRR9715742	Root	285.788
SRR9715743	Root	292.914

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	116.540
SRR8749028	MeJA induced 9h	76.816
SRR8749029	MeJA induced 9h	103.994
SRR8749030	Uninduced	51.970
SRR8749031	Uninduced	33.684
SRR8749032	Uninduced	69.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	194.121
SRR8400027	Control - Root	159.586