Gene detail

Gene detail information of Glyur000016s00003023

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63450.1	4.00E-118	cytochrome P450, family 94, subfamily B, polypeptide 1
NR	AAL54885.1	0	cytochrome P450-dependent fatty acid hydroxylase [Vicia sativa]
COG	YP_003534112.1	1.00E-36	cytochrome P450 [Haloferax volcanii DS2]
Swissprot	tr\|P98188\|C94A2_VICSA	0	Cytochrome P450 94A2
trEMBL	tr\|Q8W2N3\|Q8W2N3_VICSA	0	Cytochrome P450-dependent fatty acid hydroxylase {ECO:0000313\|EMBL:AAL54885.1}

Sequence

Transcript Sequence

>Glyur000016s00003023.1
ATGGAACTCGAAACCTTGATTTCNTGGCTCCTCATCTCTGCAACTCTGGTTTGGTTCTTAACCACAACATTATCCAAAAAATCCCCAACACCCACCAAAACCACACCACCACCCCACACTTCTTCCACCGCCATTCCCAAAGCTTACCCCATCATCGGTTCCGTGTTCGCGATTGCAGCGAACTTCCACCGGCGCGTGCAGTATCTCTCCGACATCCTCCAAGGCTGCCCCTCCTCCACCTTCGTCCTCCACCGCGCCTTCGGTTCCCGCCAAGTTTTCACGGCGAACCCCGCGGTGGTCCAACACATCCTCAAGACCAACTTCCCCTGCTACCGCAAGGGCCTGACCCTCCACCGCGCCCTCGGCGACTTCCTCGGCAACGGAATCTTCAACTCCGACGGCGATAACTGGAAGTTCCAGCGTCAGATCTCTAGCCACGAATTCAACACCAGGTCGCTCCGCAAGTTCGTCGAGACCGTCGTCGACGCCGAACTCTCCGACCGCCTCATCCCAATCCTCTCCTCCGCCGCCGAAACCAAAACCACCCTCCCGGACTTTCAAGACATCCTCCAACGATTCACGTTCGACAACATCTGCAGAATCGCGTTCGGATTCGACCCTGAGTACCTCCTCCCTTCCCTCCCGGAGACCGCGTTCGCGAAGGCCTTCGACGACGGCACGAGAATCAGCAGCGAGAGGTTCAACGCGGCGGTTCCAATGCTTTGGAAGGCGAAGAAGCTCCTTAACGTTGGGTCTGAGAAACGGCTTAGAGAGGCCGTCGCCGAAGTTAGAGGACTCGCCGGAAAAATCGTTAGGGAAAAGAAAAAGGAACTCGGAGAGAAAGCGTCGCTCGAATCGGTGGATCTTCTTTCACGTTTTCTGAGTTCTGGTCATTCGGATGAAGCATTTGTGATTGATATTGTGATAAGCTTCATTCTCGCGGGGAGGGATACGACTTCCGCGGCACTCACGTGGTTCTTCTGGTTGCTCTCGAAGNACCCTCACGTGGAAAAGAAGGTTCTGGAAGAGGTTAGGGGTAAATCGGAGAGTGTTGTGTATGATGAGGTGAAGGATATGGTTTACACTCACGCGGCGCTATGTGAGAGCATGAGGCTGTACCCGCCGGTTCCAGTGGACACCAAGGAGGTACAAAACGACGACGTTTTGCCAGATGGGACTCACGTGAGGAAAGGGTGGAGGGTGGCGTATCACGTGTACGCCATGGGGAGGTCCGAGAAGTTATGGGGACCCGATTGGGCCGAGTTTCGGCCCGAGAGGTGGTTGAGTCGGGTTGGTGGGGATGATGGGCCAAAGGGGGGATTCGTTGGGGTGGATCCTTTCACGTACCCGGTGTTCCAGGCTGGGCCCAGGGTGTGTTTGGGAAAGGAAATGGCGTTCCTGCAGATGAAGCGGGTGGTTGCCGGGATTATGAGGCGGTTCAGGGTGGTGCCCGCGGTGGCACCAGGGGTGGAGCCGGAGTACTCCGCTCACCTCACCTCCTTTGTGAAAGGTGGCTTACCGGTAAGGATTGAGAAGCGCAGTCACACAGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	167424	168977	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP94B1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003023.1	PF00067.17	p450	46	488	9.00E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.184
SRR1783600	control	6.067
SRR1783602	moderate drought stress	15.649
SRR1811619	moderate drought stress	15.833

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.069
DRR006521	Root Winter glycyrrhizin high producing strain	0.831
DRR006522	Root Winter glycyrrhizin high producing strain	0.932
DRR006523	Root Summer glycyrrhizin low producing strain	1.136
DRR006524	Root Summer glycyrrhizin low producing strain	1.066
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.955
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.014

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.222
SRR2868004	Drought Stress (root)	27.019
SRR2967015	Control (root)	20.709

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.040
SRR9715740	Leaf	3.823
SRR9715741	Leaf	11.619
SRR9715739	Root	69.473
SRR9715742	Root	8.618
SRR9715743	Root	22.323

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.726
SRR8749028	MeJA induced 9h	61.266
SRR8749029	MeJA induced 9h	46.895
SRR8749030	Uninduced	37.532
SRR8749031	Uninduced	40.660
SRR8749032	Uninduced	86.365

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.675
SRR8400027	Control - Root	9.190