Gene detail information of Glyur000016s00003022 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38870.1 | 3.00E-04 | Serine protease inhibitor, potato inhibitor I-type family protein |
| NR | XP_006378352.1 | 1.82E-15 | hypothetical protein POPTR_0010s08600g [Populus trichocarpa] |
| Swissprot | tr|P19873|ITH5_CUCMA | 9.00E-14 | Inhibitor of trypsin and hageman factor |
| trEMBL | tr|U5G1C3|U5G1C3_POPTR | 7.00E-16 | Uncharacterized protein {ECO:0000313|EMBL:ERP56149.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 162155 | 164698 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003022.1 | PF00280.13 | potato_inhibit | 8 | 50 | 1.50E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.086 |
| SRR1783600 | control | 0.002 |
| SRR1783602 | moderate drought stress | 0.663 |
| SRR1811619 | moderate drought stress | 0.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.877 |
| SRR2868004 | Drought Stress (root) | 16.168 |
| SRR2967015 | Control (root) | 2.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.547 |
| SRR9715740 | Leaf | 0.366 |
| SRR9715741 | Leaf | 0.271 |
| SRR9715739 | Root | 3.664 |
| SRR9715742 | Root | 0.204 |
| SRR9715743 | Root | 0.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.537 |
| SRR8749028 | MeJA induced 9h | 11.875 |
| SRR8749029 | MeJA induced 9h | 17.856 |
| SRR8749030 | Uninduced | 110.151 |
| SRR8749031 | Uninduced | 363.332 |
| SRR8749032 | Uninduced | 376.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.022 |
| SRR8400027 | Control - Root | 4.911 |