Gene detail

Gene detail information of Glyur000016s00003016

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G08730.1	Myosin family protein with Dil domain
NR	XP_004495118.1	PREDICTED: myosin-J heavy chain-like isoform X1 [Cicer arietinum]
Swissprot	tr\|F4HWY6\|MYO11_ARATH	Myosin-11
trEMBL	tr\|K7LZ94\|K7LZ94_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G18140.2}

Sequence

Transcript Sequence

>Glyur000016s00003016.1
AATAAAAATGTTGATAGATCATCAGTGCCAACTGCCAAGATAGGTTCATATGCACCTCTCAACAGCCAATCGAATGGCATTCCCGAAAACATTATTGTCGGTTCTCACGTTTGGGTTGGAGATCCAGAAACAGTTTGGATTGATGGAGTAGTACTGAATATTAACGGAGAAGAAGCTGAAATTCAAACTAGCAATGAAAAGAAGGTTGTTTCTNGTTTGTCAAAATTACATCCGAAGGATACAGATGCTCCTACAGATGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTTCTGCATAATTTGGAAACCAGATACAACATCAATGAAATATATACTTATACTGGAAATATTCTTATTGCGATCAATCCCTTCCAAAGTCTTCCACACCTATATGATGTTAATGTGATGAAAAGATACAAGGGAGCGAAAGTTGGAGATTTAAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCTATGATTAATGAGGGGAAAAGCAACTCTATTCTGGTTAGTGGTGAGAGTGGTGCCGGTAAGACAGAAACCACCAAAATGCTTATGCGTTACCTGGCATATTTGGGTGGTCACACTGCATCTGAAGGACGAACTGTTGAACAACAAGTTCTAGAATCAAACCCAGTGCTTGAAGCATTTGGTAACGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTCGGAAAATTTGTTGAGATTCAATTTGATAAGTATGGACGAATATCCGGTGCAGCTATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTCTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGTTGGGAGATCCGAGATCATTTCACTACCTTAATCAATCCAGTTGCTATGAATTAGCTGGTGTTAATGCTGCTCAAGAGTATCTCAGCACAAAAAGAGCCATGGATATCGTGGGAATCAGTCAGGAGGAGCAGGATGCAATTTTCAGACTTGTAGCTGCTATTCTTCATCTTGGAAACATCAAGTTTGCAAAATCAGAAGAAGATTCATCAGTTCTAGCAGATGAAGATTCCAAGTTCCATCTCCAAACAACAGCAGAACTACTTATGTGTGCTCCTAGTGCTTTGGAAGTTGCACTTTGTAAGCGCGTGATGATTACCCCAGAAGAAATCATTGAGAGAAGTCTTGATCCTCTTGGTGCAACAGTTAGCAGGGATGGTTTAGCGAAGACATTATATTCTCGTTTATTTGACTGGTTAGTCCATAAAATTAATATCTCCATTGGGCAGGATACTAGCTCAAAATGTCTCATCGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACTAATAGTTTTGAGCAGTTTTGTATTAATTTCACGAATGAAAAGCTGCAGCAACATTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACAAAAGAAGGGATCAACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGACATTTAAAGATCACAAACGCTTCATCAAGCCGAAATTGGCACGGTCAGACTTCACTATTGTTCATTATGCAGGGGAGGTCCAGTATCAGTCTGAGCATTTTATAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTACTTCCCAATGTTCATTTGTATCAGGCCTTTTTCCTCCACTTTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATCGGTTCTCGTTTTAAGCTACAATTACAACATTTGATGGATGCACTCAATCTGACAGAGCCCCACTATATTAGATGTGTGAAGCCAAATAATTTATTAAAACCTGGCATATTTGAGAATATGAACGTCATCCATCAATTACGTTCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCATAGGACCTTTCATGAATTTTTAACTCGATTAAGCATTCTTGCTCCAGATGTTCTTCGAGGGAACTTCGATGAAAAGGATTCCTGTAAAAAGATTTTAGAGAAGATTGGGCTGACAGATTATCAGATTGGGGAAACACAAATATTCCTAAGAGCTGGTCAGATGGCAGAATTGGATGCTCGGAGAGCATACCTGCTTAGCAATTCTGCAACAATTATTCAAAAGCAGATTAAAACTCATTTTACTCGGAAAACATATATTGCACTGCAAAAGTCCTCTATCTTTATGCAATCCATTTGCAGAGGAGAACTGGCACGGAGATCGTATTATCACATGAAGAGGGAAGCAGCTGCAATCAGAATTCAAACCTATACACGTGGAAGATTAGCCAGAAAATGGTATGCCGAAAGAAGGATTTCTGCCATTGTCTTGCAGACAGGTTTTCGGGTAATCGCTGCTCGTGATAAATTTAGAAATAGAAAGCAAACTAGTGCATCAACTACTGTTCAGTCTTATTGGCGCCGACATAAAGCTCTCTTTGACTATCAGAACCTTAAGAAAGCGTCAATCATTTCACAAAGTGTCAATCACTCCAGTGATAAACATGAACAGAAGGTTCGGAAGATATCAGTGGAAAATGAAAGTCCTCCTGTGGAAGAATCTTCAAATTCTTTCCAAGAAGAATCTTCAAAAGCTCAAGGATCTACTGAAGAGTTACGTAAAAAATTATCCGAAACTGAAAAAAGAGTATATCAGCTCCAGGACTCATTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGATGATCTTAAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGAGTTGACGTTGCTTCCAGTAACTCTGATAGTTCATCCACAGACTCTGATTTCACATTTCCAGCACCTGCTTCAAATCCAGAAGCTGTGTCTTCCTCGAAGCCAAAACCTTATCAACTAGTAGTTCAGGATGTCACTGCAGCGGATGGATCAGGATCTGAAAGTGAAAAGGAAGGTTCGTTTGATGATTTCTTCTAGTAAAACTTGTTTCTTCGGTCTGGCTTAAATTCTCATTTTCTCTCTTGTATCTGGGGAAACAAGGAAGAAAGACAAAGGGATGGAGGTGGCACTGGATAGGCACGTTCACGCCTTCTGTTACATACAAACTTGTAGATGTACATTTCATCTCAGGATCCCGTAGATCAGTCAGGTAGAGATAGCAAAAGAGACAATCTATGATGAACTTGTTGATCGGTGTTTCATCTTCTTGTCATCCCTTCTGAGTAAAAGTCTTATGAGATGTCCAATGACACTTATAGTGACAATTTTGTATATAATAACATATTTTCATAGTTCCCCCCCCCCCCCCGGGTTTTCAGTCTTTATGGTTTTCAACTTTACCAAGTTGTAATGCCATCTACATGGCGCTTCACCTACCCCAGATATCATTTTCATTTACACCGAACTTCGGCCAGTGTATTGCATGTTGCCCAGGGCTTTAGGAGGGGTAGA

Protein Sequence

>Glyur000016s00003016.1
NKNVDRSSVPTAKIGSYAPLNSQSNGIPENIIVGSHVWVGDPETVWIDGVVLNINGEEAEIQTSNEKKVVSXLSKLHPKDTDAPTDGVDDMTKLAYLHEPGVLHNLETRYNINEIYTYTGNILIAINPFQSLPHLYDVNVMKRYKGAKVGDLSPHVFAIAEAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGHTASEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSSCYELAGVNAAQEYLSTKRAMDIVGISQEEQDAIFRLVAAILHLGNIKFAKSEEDSSVLADEDSKFHLQTTAELLMCAPSALEVALCKRVMITPEEIIERSLDPLGATVSRDGLAKTLYSRLFDWLVHKINISIGQDTSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGINWSYLEFVDNQDVLDLIEKTFKDHKRFIKPKLARSDFTIVHYAGEVQYQSEHFIDKNKDYVVPEHQDMLSTSQCSFVSGLFPPLSEETAKSAKFSSIGSRFKLQLQHLMDALNLTEPHYIRCVKPNNLLKPGIFENMNVIHQLRSGGVLEAVRIKCAGFPTHRTFHEFLTRLSILAPDVLRGNFDEKDSCKKILEKIGLTDYQIGETQIFLRAGQMAELDARRAYLLSNSATIIQKQIKTHFTRKTYIALQKSSIFMQSICRGELARRSYYHMKREAAAIRIQTYTRGRLARKWYAERRISAIVLQTGFRVIAARDKFRNRKQTSASTTVQSYWRRHKALFDYQNLKKASIISQSVNHSSDKHEQKVRKISVENESPPVEESSNSFQEESSKAQGSTEELRKKLSETEKRVYQLQDSLNRMISSMSSQVAELKMILSTSSRLSSTFRPIARVDVASSNSDSSSTDSDFTFPAPASNPEAVSSSKPKPYQLVVQDVTAADGSGSESEKEGSFDDFF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	131119	146843	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016459 myosin complex

molecular_function

GO:0003774 motor activity

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003016.1	PF02736.14	Myosin_N	35	70	4.20E-05
Glyur000016s00003016.1	PF00063.16	Myosin_head	88	521	2.40E-171
Glyur000016s00003016.1	PF00063.16	Myosin_head	525	714	3.60E-42
Glyur000016s00003016.1	PF00612.22	IQ	732	749	0.21
Glyur000016s00003016.1	PF00612.22	IQ	754	772	0.021
Glyur000016s00003016.1	PF00612.22	IQ	779	797	0.0015

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.432
SRR1783600	control	0.443
SRR1783602	moderate drought stress	0.843
SRR1811619	moderate drought stress	0.845

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.376
DRR006520	Root Summer glycyrrhizin high producing strain	0.449
DRR006521	Root Winter glycyrrhizin high producing strain	3.500
DRR006522	Root Winter glycyrrhizin high producing strain	3.384
DRR006523	Root Summer glycyrrhizin low producing strain	1.610
DRR006524	Root Summer glycyrrhizin low producing strain	1.544
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.510
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.559

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.799
SRR2868004	Drought Stress (root)	2.901
SRR2967015	Control (root)	3.147

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.062
SRR9715740	Leaf	1.502
SRR9715741	Leaf	1.576
SRR9715739	Root	0.031
SRR9715742	Root	0.327
SRR9715743	Root	0.376

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.613
SRR8749028	MeJA induced 9h	6.275
SRR8749029	MeJA induced 9h	5.473
SRR8749030	Uninduced	4.408
SRR8749031	Uninduced	6.832
SRR8749032	Uninduced	5.287

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.931
SRR8400027	Control - Root	1.774