Gene detail information of Glyur000016s00003013 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G58170.1 | 5.00E-51 | BET1P/SFT1P-like protein 14A |
| NR | AFK36257.1 | 6.55E-81 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9M2J9|BET11_ARATH | 2.00E-64 | Bet1-like SNARE 1-1 |
| trEMBL | tr|I3S7L5|I3S7L5_MEDTR | 2.00E-81 | Uncharacterized protein {ECO:0000313|EMBL:AFK36257.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 109384 | 112175 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003013.1 | PF05739.14 | SNARE | 42 | 102 | 3.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.773 |
| SRR1783600 | control | 35.613 |
| SRR1783602 | moderate drought stress | 31.550 |
| SRR1811619 | moderate drought stress | 30.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 79.544 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 79.625 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 81.038 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 79.935 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 72.314 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 72.040 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.982 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.300 |
| SRR2868004 | Drought Stress (root) | 80.436 |
| SRR2967015 | Control (root) | 68.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.574 |
| SRR9715740 | Leaf | 35.606 |
| SRR9715741 | Leaf | 35.701 |
| SRR9715739 | Root | 24.078 |
| SRR9715742 | Root | 27.270 |
| SRR9715743 | Root | 26.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 61.400 |
| SRR8749028 | MeJA induced 9h | 32.773 |
| SRR8749029 | MeJA induced 9h | 47.344 |
| SRR8749030 | Uninduced | 21.201 |
| SRR8749031 | Uninduced | 22.064 |
| SRR8749032 | Uninduced | 31.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 83.342 |
| SRR8400027 | Control - Root | 88.369 |