Gene detail information of Glyur000016s00003008 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42440.1 | 9.00E-47 | Lateral organ boundaries (LOB) domain family protein |
| NR | XP_003541340.1 | 1.00E-114 | PREDICTED: LOB domain-containing protein 29-like [Glycine max] |
| Swissprot | tr|Q9M2J7|LBD29_ARATH | 1.00E-68 | LOB domain-containing protein 29 |
| trEMBL | tr|I1LYI0|I1LYI0_SOYBN | 4.00E-115 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G18210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 90637 | 91474 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003008.1 | PF03195.9 | DUF260 | 7 | 107 | 1.00E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.357 |
| SRR1783600 | control | 4.471 |
| SRR1783602 | moderate drought stress | 3.197 |
| SRR1811619 | moderate drought stress | 3.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.300 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.297 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.153 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.152 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.152 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.973 |
| SRR2868004 | Drought Stress (root) | 8.115 |
| SRR2967015 | Control (root) | 3.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.088 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 1.801 |
| SRR9715742 | Root | 1.937 |
| SRR9715743 | Root | 1.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 302.298 |
| SRR8749028 | MeJA induced 9h | 119.408 |
| SRR8749029 | MeJA induced 9h | 132.478 |
| SRR8749030 | Uninduced | 9.389 |
| SRR8749031 | Uninduced | 9.897 |
| SRR8749032 | Uninduced | 8.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.640 |
| SRR8400027 | Control - Root | 2.166 |