Gene detail

Gene detail information of Glyur000016s00003003

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06620.1	1.00E-60	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	KEH42564.1	1.12E-173	desacetoxyvindoline 4-hydroxylase, putative [Medicago truncatula]
COG	YP_001341292.1	9.00E-23	2OG-Fe(II) oxygenase [Marinomonas sp. MWYL1]
Swissprot	tr\|Q84MB3\|ACCH1_ARATH	3.00E-93	1-aminocyclopropane-1-carboxylate oxidase homolog 1
trEMBL	tr\|A0A072VKL7\|A0A072VKL7_MEDTR	4.00E-174	Desacetoxyvindoline 4-hydroxylase, putative {ECO:0000313\|EMBL:KEH42564.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	61997	63301	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003003.1	PF14226.1	DIOX_N	71	169	3.40E-20
Glyur000016s00003003.1	PF03171.15	2OG-FeII_Oxy	226	291	5.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.933
SRR1783600	control	6.826
SRR1783602	moderate drought stress	13.249
SRR1811619	moderate drought stress	13.608

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.543
DRR006520	Root Summer glycyrrhizin high producing strain	2.673
DRR006521	Root Winter glycyrrhizin high producing strain	0.255
DRR006522	Root Winter glycyrrhizin high producing strain	0.370
DRR006523	Root Summer glycyrrhizin low producing strain	2.878
DRR006524	Root Summer glycyrrhizin low producing strain	2.928
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.780
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.783

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.760
SRR2868004	Drought Stress (root)	8.229
SRR2967015	Control (root)	8.584

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.072
SRR9715741	Leaf	0.137
SRR9715739	Root	2.146
SRR9715742	Root	3.844
SRR9715743	Root	3.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.211
SRR8749031	Uninduced	0.025
SRR8749032	Uninduced	0.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.184
SRR8400027	Control - Root	17.354