Gene detail information of Glyur000016s00003002 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31280.1 | 3.00E-122 | conserved peptide upstream open reading frame 7 |
| NR | KHN03867.1 | 0 | Putative basic helix-loop-helix protein [Glycine soja] |
| Swissprot | tr|Q58G01|LHWL3_ARATH | 3.00E-161 | Transcription factor bHLH155 |
| trEMBL | tr|V7BIT9|V7BIT9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW16913.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 54317 | 61554 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003002.1 | PF14215.1 | bHLH-MYC_N | 5 | 167 | 5.90E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.455 |
| SRR1783600 | control | 6.532 |
| SRR1783602 | moderate drought stress | 11.811 |
| SRR1811619 | moderate drought stress | 11.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.235 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.659 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.441 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.118 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.477 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.194 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.677 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.251 |
| SRR2868004 | Drought Stress (root) | 77.822 |
| SRR2967015 | Control (root) | 75.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.550 |
| SRR9715740 | Leaf | 8.010 |
| SRR9715741 | Leaf | 12.183 |
| SRR9715739 | Root | 1.701 |
| SRR9715742 | Root | 28.883 |
| SRR9715743 | Root | 24.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.979 |
| SRR8749028 | MeJA induced 9h | 7.131 |
| SRR8749029 | MeJA induced 9h | 3.574 |
| SRR8749030 | Uninduced | 5.730 |
| SRR8749031 | Uninduced | 3.379 |
| SRR8749032 | Uninduced | 2.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.086 |
| SRR8400027 | Control - Root | 32.659 |