Gene detail information of Glyur000016s00003000 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31270.1 | 2.00E-42 | homolog of yeast CDT1 A |
| NR | KEH42561.1 | 0 | DNA replication factor CDT1-like protein [Medicago truncatula] |
| Swissprot | tr|Q9SJW9|CDT1A_ARATH | 2.00E-54 | CDT1-like protein a, chloroplastic (Precursor) |
| trEMBL | tr|A0A072VLQ6|A0A072VLQ6_MEDTR | 0 | DNA replication factor CDT1-like protein {ECO:0000313|EMBL:KEH42561.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 40799 | 43995 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003000.1 | PF08839.6 | CDT1 | 107 | 231 | 2.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.320 |
| SRR1783600 | control | 16.515 |
| SRR1783602 | moderate drought stress | 4.962 |
| SRR1811619 | moderate drought stress | 4.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.724 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.714 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.089 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.038 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.397 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.474 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.682 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.538 |
| SRR2868004 | Drought Stress (root) | 9.294 |
| SRR2967015 | Control (root) | 9.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.194 |
| SRR9715740 | Leaf | 0.560 |
| SRR9715741 | Leaf | 0.673 |
| SRR9715739 | Root | 1.924 |
| SRR9715742 | Root | 2.875 |
| SRR9715743 | Root | 2.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 53.697 |
| SRR8749028 | MeJA induced 9h | 21.927 |
| SRR8749029 | MeJA induced 9h | 16.981 |
| SRR8749030 | Uninduced | 0.096 |
| SRR8749031 | Uninduced | 0.154 |
| SRR8749032 | Uninduced | 0.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.569 |
| SRR8400027 | Control - Root | 12.108 |